CK740299

Overview
NameCK740299
Unique NameCK740299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1449 contig Csv1_Contig1449:1..460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740299 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.905e-17
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 2
Query:  320 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIA 460
            +L  AREAVNEVQVV DSSW+ LVI SE PVLV+FWAPWCGPCRMIA
Sbjct:   58 VLLHAREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIA 104          
BLAST of CK740299 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.302e-15
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 2
Query:  122 MAMKNCFQVSSVYSTRAGVVQCY----QPFSSVKKIHLPIGNGLNKXXXXXXXXXXXXXXXXXXXXXXXXILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIA 460
            MA++NC Q+S+  S     V+ +    QP S   K+++P   GL +                        ++CKA EAV EVQ V DSSW+  V+ SE PV+V+FWAPWCGPC++IA
Sbjct:    1 MAIENCLQLSTSASVGTVAVKSHVHHLQPSS---KVNVPTFRGLKRSFPALSSSVSSSSPRQFRYSS---VVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIA 111          
BLAST of CK740299 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.715e-13
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 2
Query:  323 LCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIA 460
            +CK +  V+EV V  + +W+N+VI+ E+PVLVEFWAPWCGPCRMIA
Sbjct:   60 VCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIA 105          
BLAST of CK740299 vs. ExPASy Swiss-Prot
Match: TRXM2_ARATH (Thioredoxin M-type 2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.032e-12
Identity = 25/46 (54.35%), Postives = 39/46 (84.78%), Query Frame = 2
Query:  320 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMI 457
            ++C+A+E   ++QVV DS+W++LV+ +  PV+V+FWAPWCGPC+MI
Sbjct:   71 VVCEAQETTTDIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMI 116          
BLAST of CK740299 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.348e-12
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 2
Query:  323 LCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIA 460
            +C+++ AV+EV V  + +W+ LV++ E PVLVEFWAPWCGPCRMIA
Sbjct:   51 VCQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIA 96          
BLAST of CK740299 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.734e-12
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 2
Query:  326 CKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIA 460
            C+    V+EV V  + +W+++V+ SE PVLVEFWAPWCGPCRMIA
Sbjct:   58 CQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIA 102          
BLAST of CK740299 vs. ExPASy Swiss-Prot
Match: TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.734e-12
Identity = 24/46 (52.17%), Postives = 38/46 (82.61%), Query Frame = 2
Query:  320 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMI 457
            I+C+A++    + +V DS+WE+LV+ ++ PV+V+FWAPWCGPC+MI
Sbjct:   62 IICEAQDTATGIPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMI 107          
BLAST of CK740299 vs. ExPASy Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.490e-11
Identity = 23/46 (50.00%), Postives = 37/46 (80.43%), Query Frame = 2
Query:  320 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMI 457
            ++C+A++    + VV DS+W++LV+ ++ PV V+FWAPWCGPC+MI
Sbjct:   65 VICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMI 110          
The following BLAST results are available for this feature:
BLAST of CK740299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TRXM_PEA6.905e-1780.85Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM_SPIOL1.302e-1539.32Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXM_WHEAT2.715e-1363.04Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]
TRXM2_ARATH1.032e-1254.35Thioredoxin M-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM_MAIZE1.348e-1260.87Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM_ORYSJ8.734e-1260.00Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM_BRANA8.734e-1252.17Thioredoxin M-type, chloroplastic OS=Brassica napu... [more]
TRXM1_ARATH1.490e-1150.00Thioredoxin M-type 1, chloroplastic OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6443 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740299 ID=CK740299; Name=CK740299; organism=Citrus sinensis; type=EST; length=460bp
AGAATATCAGTCATCGCCCAAAAGACGAAGGCCACATCTTCTTCTATACT
CCTATCAATACTCTTCAACTTGCTGTGAACAGAAACATTCCCAGCAAAAG
AAAAAAGAAAGACAGAGAAAAATGGCTATGAAGAATTGTTTTCAAGTTAG
CTCAGTGTATAGCACTAGAGCTGGTGTGGTACAATGTTACCAACCATTTT
CATCTGTAAAGAAGATTCATTTGCCGATTGGTAACGGGTTGAATAAATCC
AATCTCTCATTCACTTCATCATGCTCATCTCTTTCTCTTCCACTCGGAAG
CAGAAGCAGAAACTCCTTGATTCTCTGCAAAGCTCGGGAAGCTGTCAATG
AAGTTCAAGTGGTGACAGATTCAAGTTGGGAAAACCTTGTGATATCAAGT
GAAAACCCTGTGCTTGTGGAGTTTTGGGCACCTTGGTGCGGACCATGCCG
GATGATAGCG
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