CK740302

Overview
NameCK740302
Unique NameCK740302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740302 vs. ExPASy Swiss-Prot
Match: GLYG2_HUMAN (Glycogenin-2 OS=Homo sapiens GN=GYG2 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.143e-17
Identity = 60/173 (34.68%), Postives = 87/173 (50.29%), Query Frame = 2
Query:    8 SVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNE-----WNYSKFRLWELTDYDKIIFIDADLLILRNIDFLFGMPEISGTGNNG--TMFNSGVMGIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVF 505
            +V  +A+ T L +  +Y  GA+   QS+R    TR LV+L+   +S+  R  L     +V  +  I +      A+ +        +K   W LT Y K +F+DAD L+L N+D LF   E S   + G    FNSGV   +PS  T +LL+ H  E  S++G DQG LN  F
Sbjct:   33 TVTDQAFVT-LATNDIYCQGALVLGQSLRRHRLTRKLVVLITPQVSSLLRVILSKVFDEVIEVNLIDSADYIHLAFLKRPELGLTLTKLHCWTLTHYSKCVFLDADTLVLSNVDELFDRGEFSAAPDPGWPDCFNSGVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFF 204          
BLAST of CK740302 vs. ExPASy Swiss-Prot
Match: GLYG_HUMAN (Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 2.274e-15
Identity = 57/170 (33.53%), Postives = 84/170 (49.41%), Query Frame = 2
Query:   20 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAE-----KDAYNEWNYSKFRLWELTDYDKIIFIDADLLILRNIDFLFGMPEISGTGNNG--TMFNSGVMGIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFT 508
            +A+ T L +   Y  GA+    S++   +TR LV+L    +S   R  LE    +V  +  + +  +      K        +K   W LT Y K +F+DAD L+L NID LF   E+S   + G    FNSGV   +PS  T+  L+   +E  S++GGDQG LN  F+
Sbjct:    4 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFS 172          
BLAST of CK740302 vs. ExPASy Swiss-Prot
Match: GLYG_RABIT (Glycogenin-1 OS=Oryctolagus cuniculus GN=GYG1 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 3.878e-15
Identity = 56/169 (33.14%), Postives = 83/169 (49.11%), Query Frame = 2
Query:   20 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAE-----KDAYNEWNYSKFRLWELTDYDKIIFIDADLLILRNIDFLFGMPEISGTGNNG--TMFNSGVMGIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVF 505
            +A+ T L +   Y  GA+    S++   ++R L +L    +S   R  LE    +V T+  + +  +      K        +K   W LT Y K +F+DAD L+L NID LF   E+S   + G    FNSGV   +PS  T+  L+   +E  S++GGDQG LN  F
Sbjct:    4 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFF 171          
BLAST of CK740302 vs. ExPASy Swiss-Prot
Match: GLYG_MOUSE (Glycogenin-1 OS=Mus musculus GN=Gyg1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 6.615e-15
Identity = 56/170 (32.94%), Postives = 83/170 (48.82%), Query Frame = 2
Query:   20 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAE-----KDAYNEWNYSKFRLWELTDYDKIIFIDADLLILRNIDFLFGMPEISGTGNNG--TMFNSGVMGIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFT 508
            +A+ T L +   Y  GA+    S++   +TR +V+L    +S   R  LE     V  +  + +  +      K        +K   W LT Y K +F+DAD L+L NID LF   E+S   + G    FNSGV   +PS  T+  L+   +E  S++GGDQG LN  F+
Sbjct:    4 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRMVVLTSPQVSDSMRKVLETVFDDVIMVDVLDSGDSAHLTLMKRPELGITLTKLHCWSLTQYSKCVFMDADTLVLSNIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFS 172          
BLAST of CK740302 vs. ExPASy Swiss-Prot
Match: GLYG_RAT (Glycogenin-1 OS=Rattus norvegicus GN=Gyg1 PE=2 SV=4)

HSP 1 Score: 79.7221 bits (195), Expect = 8.639e-15
Identity = 56/170 (32.94%), Postives = 83/170 (48.82%), Query Frame = 2
Query:   20 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAE-----KDAYNEWNYSKFRLWELTDYDKIIFIDADLLILRNIDFLFGMPEISGTGNNG--TMFNSGVMGIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFT 508
            +A+ T L +   Y  GA+    S++   +TR  V+L    +S   R  LE    +V  +  + +  +      K        +K   W LT Y K +F+DAD L+L NID LF   E+S   + G    FNSGV   +PS  T+  L+   +E  S++GGDQG LN  F+
Sbjct:    4 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRTVVLASPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPELGITLTKLHCWSLTQYSKCVFMDADTLVLSNIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFS 172          
The following BLAST results are available for this feature:
BLAST of CK740302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GLYG2_HUMAN4.143e-1734.68Glycogenin-2 OS=Homo sapiens GN=GYG2 PE=1 SV=2[more]
GLYG_HUMAN2.274e-1533.53Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4[more]
GLYG_RABIT3.878e-1533.14Glycogenin-1 OS=Oryctolagus cuniculus GN=GYG1 PE=1... [more]
GLYG_MOUSE6.615e-1532.94Glycogenin-1 OS=Mus musculus GN=Gyg1 PE=2 SV=3[more]
GLYG_RAT8.639e-1532.94Glycogenin-1 OS=Rattus norvegicus GN=Gyg1 PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6446 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740302 ID=CK740302; Name=CK740302; organism=Citrus sinensis; type=EST; length=514bp
CTCAGGGAGCGTGCACAGAGAAGCATATGCAACCATTCTCCATTCAGCTC
ATGTCTATGTCTGTGGAGCCATTGCTGCTGCACAGAGCATCCGCATGTCA
GGATCCACCCGGGACCTTGTAATACTTGTTGATGAGACAATCAGTGCCTA
CCACAGGAGTGGCCTTGAGGCAGCTGGATGGAAAGTCAGGACAATCCAAA
GGATCAGGAATCCGAAAGCTGAGAAAGATGCGTACAACGAATGGAACTAC
AGCAAGTTTCGGTTGTGGGAGTTGACAGACTATGACAAGATCATCTTCAT
TGATGCAGACTTGCTCATACTGAGAAACATTGATTTCTTATTTGGAATGC
CAGAAATTTCGGGTACGGGAAACAATGGCACTATGTTTAACTCTGGTGTC
ATGGGTATTGAGCCCTCAAGTTGTACCTTCCAGCTTTTGATGGATCACAT
CAATGAGTTCGAGTCCTACAACGGAGGGGATCAGGGATACTTGAATGAAG
TCTTTACATGGGGG
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