CK740303

Overview
NameCK740303
Unique NameCK740303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 1.913e-51
Identity = 106/169 (62.72%), Postives = 119/169 (70.41%), Query Frame = 2
Query:    2 ALSSPNSTVSSFQMDH----FCIRNGRSKRDLFDVEISHXXXXXXXXXXXXNGLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERV 496
            ++S P+S  SSFQ+D     +      +KRD+ D                 NG TRKKLRLSK+QSAFLE+SFKEH+T               RPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCE+LTEENRRLQKE++ELR LKTS PFYMQLPATTLTMCPSCERV
Sbjct:  134 SVSPPDSVTSSFQLDFGIKSYGYERRSNKRDIDDEVERSASRASNEDNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQLPATTLTMCPSCERV 302          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.988e-49
Identity = 105/163 (64.42%), Postives = 110/163 (67.48%), Query Frame = 2
Query:    8 SSPNSTVSSFQMDHFCIRNGRSKRDLFDVEISHXXXXXXXXXXXXNGLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERV 496
            SSPN++  SF MD F   +G    D                     G  RKKLRLSKEQSAFLEESFKEH+T               RPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEL ELRALKT  PFYM LPATTL+MCPSCERV
Sbjct:  128 SSPNNSAGSFPMDDFS-GHGLGGNDAAPGGGGGDRSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLPATTLSMCPSCERV 289          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.988e-49
Identity = 105/163 (64.42%), Postives = 110/163 (67.48%), Query Frame = 2
Query:    8 SSPNSTVSSFQMDHFCIRNGRSKRDLFDVEISHXXXXXXXXXXXXNGLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERV 496
            SSPN++  SF MD F   +G    D                     G  RKKLRLSKEQSAFLEESFKEH+T               RPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEL ELRALKT  PFYM LPATTL+MCPSCERV
Sbjct:   41 SSPNNSAGSFPMDDFS-GHGLGGNDAAPGGGGGDRSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLPATTLSMCPSCERV 202          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.316e-47
Identity = 92/114 (80.70%), Postives = 96/114 (84.21%), Query Frame = 2
Query:  155 RKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERV 496
            RKKLRLSKEQSAFLEESFKEH+T               RPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRL KEL ELRALKT++PFYM LPATTL+MCPSCERV
Sbjct:  173 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLPATTLSMCPSCERV 286          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 8.316e-47
Identity = 92/114 (80.70%), Postives = 96/114 (84.21%), Query Frame = 2
Query:  155 RKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERV 496
            RKKLRLSKEQSAFLEESFKEH+T               RPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRL KEL ELRALKT++PFYM LPATTL+MCPSCERV
Sbjct:  173 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLPATTLSMCPSCERV 286          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.243e-42
Identity = 82/114 (71.93%), Postives = 94/114 (82.46%), Query Frame = 2
Query:  155 RKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERV 496
            RKKLRL+K+QSA LE++FK H+T               RPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+ENRRLQKELQ+L+ALK SQPFYM +PA TLTMCPSCER+
Sbjct:  125 RKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHMPAATLTMCPSCERL 238          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.168e-42
Identity = 88/134 (65.67%), Postives = 97/134 (72.39%), Query Frame = 2
Query:  143 NGLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTS----------------QPFYMQLPATTLTMCPSCERV 496
            +G TRKKLRL+KEQSA LE+ F+EH+T               RPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCETLTEENRRLQ+ELQELRALK +                 PFYMQLPA TLT+CPSCERV
Sbjct:  122 DGSTRKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERV 255          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.168e-42
Identity = 88/134 (65.67%), Postives = 97/134 (72.39%), Query Frame = 2
Query:  143 NGLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTS----------------QPFYMQLPATTLTMCPSCERV 496
            +G TRKKLRL+KEQSA LE+ F+EH+T               RPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCETLTEENRRLQ+ELQELRALK +                 PFYMQLPA TLT+CPSCERV
Sbjct:  122 DGSTRKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERV 255          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.344e-41
Identity = 79/114 (69.30%), Postives = 92/114 (80.70%), Query Frame = 2
Query:  155 RKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERV 496
            RKKLRL+K+QSA LEESFK+H+T               RPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETL +EN RLQKE+QEL+ LK +QPFYM +PA+TLT CPSCER+
Sbjct:  112 RKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHMPASTLTKCPSCERI 225          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.384e-40
Identity = 85/117 (72.65%), Postives = 92/117 (78.63%), Query Frame = 2
Query:  152 TRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQP-FYMQL-PATTLTMCPSCERV 496
            +RKKLRLSK+QSA LE+SF+EH T               RPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCETLTEENRRLQKE+QELRALK   P  YM + P TTLTMCPSCERV
Sbjct:   80 SRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCERV 196          
The following BLAST results are available for this feature:
BLAST of CK740303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
HAT14_ARATH1.913e-5162.72Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
HOX11_ORYSJ3.988e-4964.42Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI3.988e-4964.42Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX27_ORYSJ8.316e-4780.70Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI8.316e-4780.70Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HAT22_ARATH1.243e-4271.93Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HOX19_ORYSJ6.168e-4265.67Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI6.168e-4265.67Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HAT9_ARATH2.344e-4169.30Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HOX17_ORYSJ3.384e-4072.65Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6447 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740303 ID=CK740303; Name=CK740303; organism=Citrus sinensis; type=EST; length=570bp
GGCGCTGTCATCTCCGAACAGTACGGTGTCGTCTTTTCAAATGGATCACT
TTTGTATAAGAAACGGAAGGAGCAAGAGAGATTTATTCGATGTTGAAATA
AGTCATGACAGAGCAAGTTCAAGAGCAAGTGATGATGAAGAAAATGGCTT
AACAAGAAAAAAGCTGAGGCTCTCTAAAGAACAATCTGCTTTTCTCGAAG
AAAGTTTCAAAGAACACAATACCCTCAATCCCAAGCAAAAGCTTGCTTTG
GCCAAACAATTGAATCTCCGTCCTCGCCAAGTTGAAGTGTGGTTTCAAAA
CCGGAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTGGATTGTGAGTATT
TAAAGAGATGCTGTGAGACATTGACGGAAGAGAACAGGAGGTTACAGAAA
GAGCTGCAAGAATTAAGAGCTTTAAAAACCTCTCAACCTTTTTACATGCA
GCTCCCTGCCACTACTCTCACTATGTGTCCTTCTTGCGAGCGCGTGGGCA
CCGGCTCCACCTCCGGCGGCACAGCCACCACTGCAGCAGCTGCTACCACC
GCCGCTAAGGGCAACAACAG
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