CK740304

Overview
NameCK740304
Unique NameCK740304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length368
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740304_ssr244 microsatellite CK740304_ssr244:244..255. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:374..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.965e-23
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            CNGVRSLN AA+TT DRQAACNCLK A+ SI G+N N+AAGLP +CGVS+PYKISP+TDC  V+
Sbjct:   28 CNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.490e-22
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            C+GV+SLN AA+TTPDRQAAC CLK AY SI G+NA  AA  P +CGVSIPYKISP+TDCS+V+
Sbjct:   53 CSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.070e-21
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            CNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV+IPY+ISP+T+C+ V+
Sbjct:   54 CNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.934e-20
Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            CNG+R++N  A+TT DRQ ACNCLKQ   S+PG+NAN AA LP +CGV++PYKISP+T+C+ V+
Sbjct:   54 CNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.934e-20
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            CNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   28 CNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.765e-20
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 190
            C+GVRSLN AARTT DR+AACNCLK A R I G+NA  AA +P +CGVS+PY IS +TDCSRV
Sbjct:   55 CSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.953e-19
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 190
            C+GVRSLN AARTT DR+AACNCLK A R I G+N   AA +P +CGVSIPY IS +TDCSRV
Sbjct:   59 CSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.350e-19
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 190
            C+GVRSLN AARTT DR+AACNCLK A   + G+NA  AA +P +CGVSIPY IS +TDCSRV
Sbjct:   57 CSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.681e-19
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 190
            CN VR LN AARTT D++ AC CLKQ   ++ G+N N AAGLP +CGV+IPYKISP TDC+RV
Sbjct:   57 CNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.420e-19
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            CNG+R++NG ARTT DRQ ACNCLK    SI G+N N AAGLP +CGV++PYKIS +T+C+ V+
Sbjct:   52 CNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
The following BLAST results are available for this feature:
BLAST of CK740304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
LTP1_MORNI4.965e-2373.44Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_HELAN5.490e-2271.88Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU6.070e-2165.63Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV3.934e-2062.50Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_PRUPE3.934e-2065.63Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_SORBI8.765e-2069.84Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_SORBI1.953e-1969.84Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP_MAIZE4.350e-1968.25Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP_DAUCA5.681e-1965.08Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP_MALDO7.420e-1962.50Non-specific lipid-transfer protein OS=Malus domes... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6448 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740304 ID=CK740304; Name=CK740304; organism=Citrus sinensis; type=EST; length=368bp
CTGTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACC
GCCAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGC
ATCAACGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCAT
TCCTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTT
GAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAAT
AAATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTG
TGTGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATA
TTAAATATGTAAACGTGA
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