CK740323

Overview
NameCK740323
Unique NameCK740323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740323_ssr325 microsatellite CK740323_ssr325:325..336. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4724 contig Csv1_Contig4724:391..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740323 vs. ExPASy Swiss-Prot
Match: TRXL1_ARATH (Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.572e-62
Identity = 120/186 (64.52%), Postives = 140/186 (75.27%), Query Frame = 3
Query:   12 DQHNKSSISVFPKSCAGSCSMKLRSQALRLSS--PLTSDFHGHGVVLQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQGNYEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATIKNLK 563
            + H     S  P S  G   +K     L+L S  PL S F+G  +V  +++    R SS+   I+AQT LRIG AQ+WWEKGL+ NMRE++SAQ+LV+SL +AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQ NYEEHKSMCYSL VHVLPFFRFYRG+ GR+CSFSCTNATIK  +
Sbjct:   17 NHHRVDDFSFSPVSFGGF-GLKKSFSCLKLKSQKPLRSVFYGKQIVFGDSQDESFRRSSA---ITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFR 198          

HSP 2 Score: 26.5646 bits (57), Expect = 1.572e-62
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  551 QEFKDALAKHTPDR 592
            ++F+DALAKH PDR
Sbjct:  195 KKFRDALAKHGPDR 208          
BLAST of CK740323 vs. ExPASy Swiss-Prot
Match: TRXL7_ARATH (Thioredoxin-like 7, chloroplastic OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 4.936e-53
Identity = 102/175 (58.29%), Postives = 124/175 (70.86%), Query Frame = 3
Query:   39 VFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVLQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQGNYEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATIKNLK 563
            + PKS +  C +  R  +    SP T     +G +L   K IP         +  QT L IG+ Q+WWEK L+PNM+ V S QDLV SL +AGDKLVVVDFFSP CGGCKALHPKIC++AE NP+V+FLQ NYEEH+S+C SLN+HVLPFFRFYRG+ GR+CSFSCTNATI+  K
Sbjct:   27 ISPKSISSLCCISPRLISCNHFSPRTLISGENGNILFSKKKIPA-------FVRCQTSLGIGRNQKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIAEKNPEVEFLQVNYEEHRSLCQSLNIHVLPFFRFYRGSSGRVCSFSCTNATIRKFK 194          
BLAST of CK740323 vs. ExPASy Swiss-Prot
Match: TRXL3_ARATH (Thioredoxin-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.545e-43
Identity = 91/188 (48.40%), Postives = 121/188 (64.36%), Query Frame = 3
Query:    3 FNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVLQENKAIPKRGSSSKFSISAQTG-LRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQGNYEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATIKNLK 563
            F+Q+  +KS +S F        S+ L+   +      ++DF         N+ +    SSS     A+T  + + +  RWWEK    NM E+ SA  LV+SL +AGD+LVV+DF+SPGCGGCK+LHPKICQLAE NP+V FL+ N EE ++MC+ LNVHVLPFF+FYRGA G++CSFSCT ATI   K
Sbjct:   19 FSQENQSKSKLSPF-------MSLDLKEHPMA-----SADF--------TNQTLTAFSSSSASPFQAKTSSIGMSRGMRWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKSLHPKICQLAETNPNVMFLKVNQEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATINKFK 186          
BLAST of CK740323 vs. ExPASy Swiss-Prot
Match: TRXL2_ARATH (Thioredoxin-like 2, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.806e-29
Identity = 62/154 (40.26%), Postives = 97/154 (62.99%), Query Frame = 3
Query:  102 SSPLTSDFHGHGVVLQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQGNYEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATIKNLK 563
            SS  TS   G+ V    N+++         S+  Q      +  +WWE+   PNM ++ SA+  + +L  AGD+LV+VDF+   CG C+A+ PK+C+ A+ +P++ FL+ N++E+KS+C SLNV VLP+F FYRGA G++ SFSC+ A  + L+
Sbjct:   50 SSLTTSSLIGNLVFSSRNQSL---------SVKVQALAAETEQPKWWERKAGPNMIDITSAEQFLNALKDAGDRLVIVDFYGTWCGSCRAMFPKLCKTAKEHPNILFLKVNFDENKSLCKSLNVKVLPYFHFYRGADGQVESFSCSLAKFQKLR 194          
BLAST of CK740323 vs. ExPASy Swiss-Prot
Match: TRXL6_ARATH (Thioredoxin-like 6, chloroplastic OS=Arabidopsis thaliana GN=At4g29670 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.599e-27
Identity = 61/151 (40.40%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  102 SSPLTSDFHGHGVVLQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQGNYEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATIK 554
            SSP  S  H H      +    +R  S    +     +   +  +WWE+   PNM ++ S ++ + +L  AG++LV+V+F+   C  C+AL PK+C+ A  +PD+ FL+ N++E+K MC SLNV VLPFF FYRGA G+L SFSC+ A +K
Sbjct:   52 SSPSCSSSHYHPSSGLGSHLPLRRPKSQVVRVKVDENVAETEPPKWWERNA-PNMVDIHSTEEFLSALSGAGERLVIVEFYGTWCASCRALFPKLCKTAVEHPDIVFLKVNFDENKPMCKSLNVRVLPFFHFYRGADGQLESFSCSLAKVK 201          
The following BLAST results are available for this feature:
BLAST of CK740323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRXL1_ARATH1.572e-6264.52Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g... [more]
TRXL7_ARATH4.936e-5358.29Thioredoxin-like 7, chloroplastic OS=Arabidopsis t... [more]
TRXL3_ARATH3.545e-4348.40Thioredoxin-like 3, chloroplastic OS=Arabidopsis t... [more]
TRXL2_ARATH3.806e-2940.26Thioredoxin-like 2, chloroplastic OS=Arabidopsis t... [more]
TRXL6_ARATH1.599e-2740.40Thioredoxin-like 6, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6467 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740323 ID=CK740323; Name=CK740323; organism=Citrus sinensis; type=EST; length=594bp
ATTTTAATCAAGATCAACACAATAAGAGCAGCATATCTGTGTTTCCAAAA
AGCTGTGCTGGGTCGTGCTCAATGAAATTGAGATCCCAGGCTCTGAGGCT
CTCTTCACCACTAACCAGTGATTTTCATGGACATGGAGTTGTTCTTCAAG
AAAATAAAGCCATCCCCAAGAGAGGAAGCTCATCCAAGTTCTCCATTAGT
GCACAGACTGGCCTTAGAATTGGGAAGGCACAAAGGTGGTGGGAAAAGGG
GCTGCAACCAAACATGAGAGAGGTGGCTTCTGCACAAGATTTGGTGGAAT
CCCTTTGGCATGCTGGGGATAAACTTGTTGTTGTTGATTTCTTCTCCCCT
GGCTGTGGTGGATGCAAAGCTCTCCATCCCAAGATATGTCAATTGGCAGA
GATGAACCCAGATGTGCAGTTTCTTCAGGGTAATTATGAGGAGCACAAAT
CCATGTGTTATAGCCTTAATGTTCACGTCCTGCCTTTTTTCCGGTTTTAC
AGAGGGGCTCATGGCCGATTATGCAGCTTTAGTTGTACTAATGCAACGAT
CAAGAATTTAAAGATGCACTGGCTAAGCATACACCAGATCGATG
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