CK932597

Overview
NameCK932597
Unique NameCK932597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12997 contig Csv1_Contig12997:14..553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932597 vs. ExPASy Swiss-Prot
Match: SC61B_ARATH (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.547e-20
Identity = 54/79 (68.35%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   85 APPRGSAAATANMCRRRTXXXXXXXXXXXXXXXXXTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVMGKLYFVR 321
            AP RGSAAATA+M RR+                  +MLQFYTDDAPGLKISPNVVL+MSIGFIAFVAVLHVMGKLYFV+
Sbjct:    6 APQRGSAAATASMRRRKPTSGAGGGGASGGAAG--SMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKLYFVK 82          
The following BLAST results are available for this feature:
BLAST of CK932597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SC61B_ARATH1.547e-2068.35Protein transport protein Sec61 subunit beta OS=Ar... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004531_H09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932597 ID=CK932597; Name=CK932597; organism=Citrus sinensis; type=EST; length=540bp
GGGGACGAATCAAAATTTGCAATTGCTGCTTCTTCGACGATCTGAAATTT
TTCGAGTGGAGTCAAAATGGCTTTGACCGGACCTGCACCGCCCAGAGGAA
GCGCAGCAGCTACTGCAAATATGTGTAGGAGGAGGACGAGCAGTGCTGGG
GCTGGGGCTGGGGCTGGGGCCTCGGGAGGTGCAGCTGGTACCATGCTCCA
GTTTTACACAGATGATGCTCCAGGACTTAAGATCTCTCCGAATGTTGTGC
TTGTCATGAGCATTGGATTCATTGCCTTTGTTGCTGTTCTTCATGTCATG
GGAAAGCTTTACTTTGTCCGAAAAGAGTAGAGCAGCCTGAATTTGATAGC
ATACTAAATCTAAATTCGGTATGATGTGTCTGGATTTTGAAAACCAGATT
TAGCTTTCGTTCAGTTTACTGGTGGTTGAGGTTGCTTAATGTAGTTGTAA
CTCTGGAGAGAATGACTCTTATTCAATGCCTTAAAGACTGCAAAATATCA
ATCTTTTCTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top