CK932641

Overview
NameCK932641
Unique NameCK932641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.317e-32
Identity = 69/87 (79.31%), Postives = 78/87 (89.66%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            MAS DVE+RCFVGGLA A  T D +L  AFS YG++L+SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWA--TDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.333e-32
Identity = 69/84 (82.14%), Postives = 75/84 (89.29%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            A+VE+RCFVGGLA A  T D SL +AFS +GDI +SKIINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQ
Sbjct:    2 AEVEYRCFVGGLAWA--TNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 67/87 (77.01%), Postives = 78/87 (89.66%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            MAS DVE+RCFVGGLA A  T D +L  AF+ YGD+++SKIINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASGDVEYRCFVGGLAWA--TDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.668e-31
Identity = 67/87 (77.01%), Postives = 78/87 (89.66%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            MAS DVE+RCFVGGLA A  T + SL  AFS +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWA--TDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.988e-29
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            MA+ADVE+RCFVGGLA A  T++ SL  AF++YG+IL+SK+I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWA--TSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.796e-28
Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            ADVE+RCFVGGL  A  T D SL  AFS YGD+++SKII DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQ
Sbjct:    2 ADVEYRCFVGGLRWA--TDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.442e-27
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            ++VE+RCFVGGLA A  T D  L   FS +GD+++SKIINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQ
Sbjct:    2 SEVEYRCFVGGLAWA--TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.884e-27
Identity = 59/84 (70.24%), Postives = 72/84 (85.71%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            ++VE+RCFVGGLA A  T D+ L   FS +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQ
Sbjct:    2 SEVEYRCFVGGLAWA--TGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.213e-27
Identity = 59/87 (67.82%), Postives = 73/87 (83.91%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            MA+ADVE+RCFVGGLA A  T + +L +AF+ +G +++SK+I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWA--TNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.545e-21
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 2
Query:  146 SSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            +SLH AFS YG++LESKII DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQ
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of CK932641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GRP1_SINAL3.317e-3279.31Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP1_DAUCA4.333e-3282.14Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP7_ARATH7.390e-3277.01Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP2_SINAL3.668e-3177.01Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRPA_MAIZE9.988e-2972.41Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP_HORVU3.796e-2873.81Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP8_ARATH1.442e-2771.43Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA1.884e-2770.24Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP2_SORBI3.213e-2767.82Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SORBI1.545e-2178.13Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_D03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932641 ID=CK932641; Name=CK932641; organism=Citrus sinensis; type=EST; length=747bp
GGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCCAGGCCAGGGCCACCACTGACAGCTC
TCTCCATGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTA
TTAACGATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTC
CGCGATGAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAA
TCTGGACGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCG
GTGGCGGTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGA
GGTGGTGGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCG
CGGATACGGAGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTT
ACAGCCGTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGG
AGCGGTGCTTCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATA
AATTAGGAGTTGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTT
ATGATGTGTCGTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTC
CCTGTTTGGTTAATTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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