CK932645

Overview
NameCK932645
Unique NameCK932645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1463 contig Csv1_Contig1463:1..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 6.768e-91
Identity = 169/258 (65.50%), Postives = 189/258 (73.26%), Query Frame = 2
Query:  146 HSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQ--------------------------PERTTGVAFRGRSYRLSD 841
            +SLPPI KAYGTLC                     +LV  +FQ+WRLITN FFLG FSINFGIRLLMIARYGV LEKGPFERRTADFLWMMIFG+ +LLVLS IP F + FLG+SLVFML+Y+WSREFPN+ I++YGLVTLKAFYLPWAMLALDVIFGSP++PDLLGIIAGHLYYFLTVLHPLATGKN LKTPKWV K+VARWRIGAP  +  Q                          P  ++  AFRGRSYRL+D
Sbjct:    9 NSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLFFLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFLGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGHLYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQAGGVGAAGPGAGGGVGGGGAYSSARAPPESSNTAFRGRSYRLTD 266          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2)

HSP 1 Score: 317.39 bits (812), Expect = 6.555e-86
Identity = 157/233 (67.38%), Postives = 178/233 (76.39%), Query Frame = 2
Query:  146 HSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQP--ERTTGVAFRGRSYRLS 838
            +SLPPI KAYGTLC     +C             Y  VF KFQ+WRL T+FFFLG FSINFGIRLLMIARYGV LEKG FE+RTADFLWMMIFGA+SLL LSAIP    YFLG+ +V ML+YVWSRE+PNSQI++YGLV L++FYLPWAML LDVIFGS ++P LLGI+ GH YYFL+VLHPLATGKN LKTP WV K+VAR+RIG  A    +P    T   AFRGRSYRLS
Sbjct:    9 NSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFFFLGKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDIYFLGVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGLLGILVGHTYYFLSVLHPLATGKNYLKTPMWVHKIVARFRIGVQANAPVRPAAANTGSGAFRGRSYRLS 241          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 1.785e-83
Identity = 155/234 (66.24%), Postives = 181/234 (77.35%), Query Frame = 2
Query:  149 SLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQPERT----TGVAFRGRSYRLS 838
            SLPPI KAYGTLC     +             +Y LVF KF++WRL+T+FFFL  FS+ FGIRLLMIARYGV LEKG F++RTADFLWMMIFGA+SLLVLS IP+F S+FLGI +V ML+YVWSRE PN+QINIYGLV L++FYLPWAML LDVIFGS L+P LLGI+ GHLYYF  VLHPLATGK+ LKTPKWV K+VAR+RIG  A +  +P       +GV FRGRSYRL+
Sbjct:   10 SLPPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFFFLAPFSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSIIPLFNSFFLGIPMVSMLLYVWSRENPNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGHLYYFFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVRPPANGNSGSGV-FRGRSYRLN 242          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 5.194e-83
Identity = 157/234 (67.09%), Postives = 176/234 (75.21%), Query Frame = 2
Query:  149 SLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIG----APAINRAQPERTTGVAFRGRSYRLS 838
            SLPPI KAYGTLC     +              Y  VF KF+VWR+ T+FFFLG FSINFGIRLLMIARYGV LEKG F++RTADFLWMMIFGA+SLLVLS IP   +Y LG+ +V MLVYVWSRE PN+QINIYG++ LKAFYLPW ML LDVIFGSPL+P LLGI+ GHLYY+  VLHPLATGKN LKTPKWV K+VAR+RIG    AP    A     TG AFRGRSYRL+
Sbjct:   10 SLPPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFFFLGPFSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSVIPQLNTYVLGLPMVSMLVYVWSRENPNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGHLYYYFAVLHPLATGKNYLKTPKWVHKIVARFRIGMQANAPVRAPANGNAGTG-AFRGRSYRLN 242          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.934e-37
Identity = 79/199 (39.70%), Postives = 117/199 (58.79%), Query Frame = 2
Query:  152 LPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP-LATGKNLLKTPKWVQKLV 745
            +P + +AY   CV                     LVF KFQVWRL+TNF F G    +F   +L + RY   LE+G F  RTADF++M +FG + + +L  +     +FLG +L+ MLVYVWSR  P  ++N +GL+T +A +LPWA++   ++ G+ ++ DLLGI  GH+YYFL  + P    GK LL+TP +++ L+
Sbjct:   13 VPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL--FFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLEDVFPNQPGGKRLLQTPGFLKLLL 209          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DERL3_BOVIN (Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.309e-37
Identity = 80/199 (40.20%), Postives = 115/199 (57.79%), Query Frame = 2
Query:  152 LPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP-LATGKNLLKTPKWVQKLV 745
            +P + + Y   CV                     LVF KFQVWRLITNF F G    +F   +L + RY   LE+G F  RTADF++M +FG + + +L  +     +FLG +L  MLVYVWSR  P  ++N +GL+T +A +LPWA++ L ++ G+ ++ DLLGI  GH+YYFL  + P    GK LL TP +++ L+
Sbjct:   13 VPAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL--FFLGQALTAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGLPMLLGNSILVDLLGIAVGHVYYFLEDVFPNQPGGKRLLLTPSFLKLLL 209          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DERL2_DICDI (Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.309e-37
Identity = 79/204 (38.73%), Postives = 113/204 (55.39%), Query Frame = 2
Query:  149 SLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIF-----RSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLV 745
            +LP + K Y T CV  +                + LVF K++ WRL TNFFF     +NF   +  + R+   LE+  F  R+AD+L+M IFG+  LL++ A   +     +  FL  S+ FM++YVWSR  PN  I+  GL T  A YLPW +L +  +F   L  DLLG +AGH YYFL   +PL + + LLKTP +++ L+
Sbjct:   11 NLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNFFFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLLLIMDAFLFYTKIVTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDLLGAVAGHAYYFLEDAYPLISNRRLLKTPGFLKNLM 214          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DERL2_CAEEL (Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.138e-36
Identity = 76/195 (38.97%), Postives = 115/195 (58.97%), Query Frame = 2
Query:  152 LPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLAT-GKNLLKTPKWV 733
            +PP+ + Y   CV + T               ++L+  K+Q WRLIT+F F G+F  +F   ++   RY + LE+G F  R ADF++M +FGA+ L++LS I + +  FLG +   MLVY+WSR  P  Q+N +G++T  A YLPW +L   ++ G+  V D +GI  GH+Y+FL  + P    GK  LKTP+W+
Sbjct:   11 MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAV-LMILSGIFV-QILFLGQAFTIMLVYIWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVFPFQEHGKRFLKTPQWL 203          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.386e-35
Identity = 78/199 (39.20%), Postives = 113/199 (56.78%), Query Frame = 2
Query:  152 LPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP-LATGKNLLKTPKWVQKLV 745
            +P + +AY   CV                     LVF KFQVWRLIT F F G     F   +L + RY   LE+G F  R ADF++M +FG + + +L  +     +FLG +L+ MLVYVWSR  P+ ++N +GL+  +A +LPWA++   ++ G+ +V DLLGI+ GH+YYFL  + P    GK LL TP  ++ L+
Sbjct:   13 VPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITTFLFFGPLGFGFFFNMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSL--FFLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVVTDLLGILVGHIYYFLEDVFPNQPGGKRLLLTPSVLKLLL 209          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DERL2_PONAB (Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.879e-35
Identity = 84/230 (36.52%), Postives = 122/230 (53.04%), Query Frame = 2
Query:  152 LPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSY-FLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGK-NLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRL 835
            +PP+ +AY T CV                    +L+F  FQ+WRLITNF F G    NF   ++ + RY   LE+G F  RTADF++M +FG     +++   +F S  FLG +   MLVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ DLLGI  GH+Y+FL  + P   G   +LKTP  + K +       P  N    ER  G A+ G   RL
Sbjct:   13 IPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGF---LMTLFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPS-ILKAIFDTPDEDPNYNPLPEERPGGFAW-GEGQRL 237          
The following BLAST results are available for this feature:
BLAST of CK932645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DERL1_ARATH6.768e-9165.50Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1[more]
DERL1_ORYSJ6.555e-8667.38Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 P... [more]
DER11_MAIZE1.785e-8366.24Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2[more]
DER12_MAIZE5.194e-8367.09Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1[more]
DERL3_HUMAN1.934e-3739.70Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2[more]
DERL3_BOVIN4.309e-3740.20Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1[more]
DERL2_DICDI4.309e-3738.73Probable derlin-2 homolog OS=Dictyostelium discoid... [more]
DERL2_CAEEL2.138e-3638.97Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 S... [more]
DERL3_MOUSE1.386e-3539.20Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1[more]
DERL2_PONAB6.879e-3536.52Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_D07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932645 ID=CK932645; Name=CK932645; organism=Citrus sinensis; type=EST; length=861bp
GGGGGACCANNNGTTTTTAAATTTTCCGCTGCTTATTGTCTCTTCGGAGC
ATACTATCAACAAGGGGAAAACGAAGATCTAAAGCTGCGCGTTTCGCTTG
AATTAGCCATCTGAGTCCGCAATGTCTTCACCTGCTGAATACTATCACTC
TCTTCCACCCATATGCAAGGCTTATGGGACCTTGTGTGTTGCGGTCGCTA
CAGTTTGTTCGTTAGGATTATTGGATCTTTCTATTCTTGCATTAGAATAC
AAGCTCGTGTTTTCAAAATTTCAGGTATGGAGGTTGATAACAAATTTCTT
TTTCCTTGGAACTTTTTCAATCAATTTTGGGATTCGCCTTTTGATGATAG
CGAGATATGGAGTTAACCTGGAGAAGGGACCATTTGAAAGGCGTACAGCA
GATTTTTTATGGATGATGATTTTTGGAGCCTTATCTCTGTTGGTGTTGTC
AGCCATCCCCATATTTCGATCTTATTTCCTAGGGATATCACTTGTTTTTA
TGCTTGTCTATGTCTGGAGTAGAGAATTCCCAAATTCTCAGATCAATATA
TATGGCCTCGTGACACTTAAGGCATTTTATCTACCATGGGCTATGCTTGC
TTTGGACGTCATTTTTGGTTCACCCCTTGTACCAGACCTGCTGGGAATCA
TAGCAGGACATCTGTATTACTTTTTGACTGTCTTACATCCACTTGCAACT
GGAAAGAACTTGTTGAAGACTCCAAAATGGGTACAAAAACTGGTGGCGAG
GTGGAGAATCGGAGCTCCAGCTATCAATCGTGCCCAGCCTGAAAGGACAA
CTGGTGTGGCTTTCAGAGGAAGATCATATCGTTTAAGCGATTGATTTATA
TATGGCAACGT
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