CK932656

Overview
NameCK932656
Unique NameCK932656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932656_ssr162 microsatellite CK932656_ssr162:162..173. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1466 contig Csv1_Contig1466:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH079_ARATH (Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.098e-38
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            IHVRARRGQATD HSLAERARREKISE+M  LQD++PGCNK+IGKALVLDEII
Sbjct:  151 IHVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEII 203          

HSP 2 Score: 85.1149 bits (209), Expect = 1.098e-38
Identity = 54/116 (46.55%), Postives = 71/116 (61.21%), Query Frame = 2
Query:  284 MDPPLVNEXXXXXXXXXXXXLAEIWPFPINNGGAGDAGLRMG-NMGHGF--GESSALRDGSMGE-STVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSK 619
            MDPPLVN+            L+EIWPFP+N+  A  +GLR+  N G  F   E S  +D S  E STVT+ + G   RK RDL+SED+SSK+VS++SS N+L +S  K  K  GS+
Sbjct:    1 MDPPLVNDSSFSAANPSSYTLSEIWPFPVND--AVRSGLRLAVNSGRVFTRSEHSGNKDVSAAEESTVTDLTAGWGSRKTRDLNSEDDSSKMVSSSSSGNELKESGDKKRKLCGSE 114          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BPE_ARATH (Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.414e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII
Sbjct:  134 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 186          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.275e-20
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            IHVRARRGQATDSHSLAER RREKISERMK+LQDLVPGCNKV GKAL+LDEII
Sbjct:  256 IHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEII 308          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.618e-20
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            IHVRARRGQATDSHSLAER RREKI ERMK+LQDLVPGCNKV GKAL+LDEII
Sbjct:  299 IHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEII 351          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH077_ARATH (Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.129e-19
Identity = 56/98 (57.14%), Postives = 62/98 (63.27%), Query Frame = 1
Query:  601 ENIGIKNENGSKAEVEASSAAG-------NXXXXXXXXXXXXXXXIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            EN G K    SK +V  SS  G                       IHVRARRGQATDSHSLAERARREKISERM +LQDLVPGCN++ GKA++LDEII
Sbjct:  144 ENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEII 241          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.285e-19
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            IHVRARRGQAT+SHSLAER RREKISERMK LQDLVPGCNKV GKA++LDEII
Sbjct:  301 IHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEII 353          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH137_ARATH (Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.630e-18
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            IHVRARRGQATDSHSLAER RREKISERM+ LQ+LVPGC+KV GKAL+LDEII
Sbjct:  134 IHVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEII 186          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.781e-18
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            IH+RARRGQAT+SHSLAER RREKISERMK LQDLVPGC+KV GKA++LDEII
Sbjct:  221 IHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEII 273          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.781e-18
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            IHVRARRGQATDSHS+AER RREKISERMK LQDLVPGC+K+ GKA +LDEII
Sbjct:  170 IHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEII 222          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH074_ARATH (Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.632e-18
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            IH+RARRGQAT+SHSLAER RREKISERM++LQ+LVPGCNK+ GKA++LDEII
Sbjct:  204 IHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEII 256          
The following BLAST results are available for this feature:
BLAST of CK932656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
BH079_ARATH1.098e-3886.79Transcription factor bHLH79 OS=Arabidopsis thalian... [more]
BPE_ARATH5.414e-22100.00Transcription factor BPE OS=Arabidopsis thaliana G... [more]
BH062_ARATH2.275e-2092.45Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BH078_ARATH6.618e-2090.57Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
BH077_ARATH1.129e-1957.14Transcription factor bHLH77 OS=Arabidopsis thalian... [more]
BH049_ARATH3.285e-1988.68Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH137_ARATH1.630e-1886.79Transcription factor bHLH137 OS=Arabidopsis thalia... [more]
BH076_ARATH2.781e-1884.91Transcription factor bHLH76 OS=Arabidopsis thalian... [more]
BH063_ARATH2.781e-1884.91Transcription factor bHLH63 OS=Arabidopsis thalian... [more]
BH074_ARATH3.632e-1881.13Transcription factor bHLH74 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_B04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932656 ID=CK932656; Name=CK932656; organism=Citrus sinensis; type=EST; length=890bp
GGGGATCAGCAGTCTTACACAGTCACAGCTTTTTCTTTTCATCTCCATCT
GCATCAACTTCAACCTTTAAAAATCACAAATTAAAAGCCTTCACTCTCTA
TCTCTATCATCTGTCTCTATCTCCTAATCAACTTCTTAACTAACCCCATC
ATCTCAGTCAGTCACTCACTCACTCGCTCACAAACTCTCCAAAATCCAAA
CTTTCTCTCATCTACCAGGGGCCTCGAGTGCCTGGATCCGAATCCCAATC
CGCCTTTTTAATGTACCCACCCGGGTCACTAAAATGGATCCTCCGCTTGT
AAACGAGTCTTCCTTCTCTGCTGCCAACCCTTCATCCTACAGTTTGGCAG
AGATTTGGCCTTTTCCAATCAACAATGGCGGTGCCGGTGATGCCGGTCTT
CGAATGGGGAATATGGGTCATGGGTTCGGGGAAAGTTCGGCTCTCAGAGA
TGGGTCGATGGGGGAATCAACAGTGACTGAGCAGAGTGGTGGTGGGTGTG
GCAGAAAGAGAAGGGATTTGAGCTCTGAAGATGAATCTTCTAAGATTGTT
TCTACTACTAGTAGTGCCAATGACTTGAATGATTCAAATGGTAAATGGAT
GAAAACATCGGGATCAAAAATGAAAATGGTTCAAAAGCTGAAGTGGAAGC
AAGTTCTGCAGCTGGTAACAAGCCAGCTGAAAGTAGTAAACCCTCTGAGC
CACCTAAAGANNNNATTCATGTCAGAGCAAGAAGAGGCCAAGCTACTGAT
AGCCATAGTTTAGCAGAGAGAGCTAGACGAGAAAAAATTAGCGAGAGGAT
GAAGATTCTGCAGGATCTGGTCCCTGGATGCAATAAGGTTATTGGAAAAG
CTCTTGTTCTCGATGAAATAATAATTACATTCAGTCACTA
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