CK932659

Overview
NameCK932659
Unique NameCK932659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SWI3A_ARATH (SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.525e-60
Identity = 85/153 (55.56%), Postives = 102/153 (66.67%), Query Frame = 2
Query:   74 MPQYDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVXXXXXXXXXXXXXXXTELKNQVKIKEGAPNGVRVVALPNSLKPISVP 532
            M   DP+   E ELYTIP+ SSWF WDDIHE ER    EFF  SSI+RTPK+YKEYRDF+INK+RE+  RRLTFT VRK LVGDV+LL KVF  L++WGLINF +                    +  KI++G P G+RV A PNSL+PI+ P
Sbjct:    1 MEATDPSA--EIELYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFIINKFREDTCRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSSLKKNDHLLSV---------DNAKIEQGTPAGIRVTATPNSLRPITAP 142          

HSP 2 Score: 87.4261 bits (215), Expect = 1.525e-60
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  576 QVRPGFKLPPLTSYLDVFGDLVKLKG-FKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNS 809
            +V  G K+PPLTSY DVF DL K      C  CGE+C+S  Y+++KG   ICEKCFKNGNYGE+ + DDF+   L GNS
Sbjct:  148 RVETGIKVPPLTSYSDVFSDLKKPDHVLVCAHCGERCDSPFYQHNKGIVNICEKCFKNGNYGENNTADDFK---LIGNS 223          
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SSR2_SCHPO (SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe GN=ssr2 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.296e-20
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  122 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382
            +PS++ WF    IH+ ER +  EFF+G S  +TP IYK+YRDFMIN YR EP+  LT T  R++LVGDV  + +V   L++WGLIN+
Sbjct:   20 VPSYAGWFDMSKIHDIERRSNPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYLTVTACRRNLVGDVCAIIRVHAFLEQWGLINY 106          
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SWI3B_ARATH (SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.927e-20
Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:   89 PNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 388
            P++  + +   +PS+SSWF W DI++ E  +L EFFD  S S+ PK Y   R+ +I +YR++  R+++FT VR++LV DV  + +VF  LD WGLIN+ +
Sbjct:   39 PSSSSDIDNIHVPSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKISFTDVRRTLVSDVVSIRRVFDFLDSWGLINYNS 138          
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SMRC2_MOUSE (SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:   83 YDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382
            ++ N   +     IPS+++WF ++ +H  ER AL EFF+G + S+TP+IY  YR+FMI+ YR  P   LT T  R++L GDV  + +V   L++WGLIN+
Sbjct:  413 HEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512          
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SMRC2_HUMAN (SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:   83 YDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382
            ++ N   +     IPS+++WF ++ +H  ER AL EFF+G + S+TP+IY  YR+FMI+ YR  P   LT T  R++L GDV  + +V   L++WGLIN+
Sbjct:  413 HEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512          
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SSR1_SCHPO (SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe GN=ssr1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.114e-19
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 2
Query:  122 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382
            +P  + WF +  +HE E+    EFFDG + S+TP++YKEYRDFMI+ +R      LTFT  R++L GDV  + +V R L++WGLIN+
Sbjct:   54 VPEWAQWFDFSKVHEIEKKQNPEFFDGKNTSKTPEVYKEYRDFMISTFRLNSKVYLTFTACRRNLAGDVCAVLRVHRFLEQWGLINY 140          
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SMRC1_MOUSE (SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.291e-19
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  122 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382
            IPS++SWF ++ IH  ER AL EFF+G + S+TP+IY  YR+FMI+ YR  P   LT T  R++L GDV  + +V   L++WGL+N+
Sbjct:  450 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNY 536          
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SMRC1_HUMAN (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 9.291e-19
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  122 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382
            IPS++SWF ++ IH  ER AL EFF+G + S+TP+IY  YR+FMI+ YR  P   LT T  R++L GDV  + +V   L++WGL+N+
Sbjct:  451 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNY 537          
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SWI3_YEAST (SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae GN=SWI3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  101 PEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382
            P+     IPS+S WF  + IH  E  +L EFF     S+TP++Y  YR+FM+N YR  P+   + T  R+++ GD + L ++ + L +WGLIN+
Sbjct:  300 PQAHEIVIPSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLINY 393          
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: RSC8_YEAST (Chromatin structure-remodeling complex protein RSC8 OS=Saccharomyces cerevisiae GN=RSC8 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  122 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382
            IPS +SWF    IHE E+ +  +FF+ SS  +TPK YK+ R+F+IN YR  P   LT T VR+++  DV+ + K+   L++WGLIN+
Sbjct:   82 IPSFASWFDISKIHEIEKRSNPDFFNDSSRFKTPKAYKDTRNFIINTYRLSPYEYLTITAVRRNVAMDVASIVKIHAFLEKWGLINY 168          
The following BLAST results are available for this feature:
BLAST of CK932659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SWI3A_ARATH1.525e-6055.56SWI/SNF complex subunit SWI3A OS=Arabidopsis thali... [more]
SSR2_SCHPO1.296e-2051.72SWI/SNF and RSC complexes subunit ssr2 OS=Schizosa... [more]
SWI3B_ARATH4.927e-2043.00SWI/SNF complex subunit SWI3B OS=Arabidopsis thali... [more]
SMRC2_MOUSE3.193e-1943.00SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN... [more]
SMRC2_HUMAN3.193e-1943.00SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN... [more]
SSR1_SCHPO7.114e-1947.13SWI/SNF and RSC complexes subunit ssr1 OS=Schizosa... [more]
SMRC1_MOUSE9.291e-1949.43SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN... [more]
SMRC1_HUMAN9.291e-1949.43SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN... [more]
SWI3_YEAST4.316e-1639.36SWI/SNF complex subunit SWI3 OS=Saccharomyces cere... [more]
RSC8_YEAST7.362e-1645.98Chromatin structure-remodeling complex protein RSC... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_B07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932659 ID=CK932659; Name=CK932659; organism=Citrus sinensis; type=EST; length=874bp
GGGGAAACCTATACAGAGCGAAATTTTTAGGTCGACTCCGACTCAATTCG
TGGTTCAAGTCCGACATATGGAGATGCCACAATATGACCCGAATACTAAA
CCCGAATTCGAACTCTACACCATCCCAAGTCACTCCAGTTGGTTTAGATG
GGACGACATTCACGAAACCGAGCGTACTGCCCTAAAAGAGTTCTTCGACG
GGAGCTCAATTTCAAGAACACCGAAGATATACAAAGAGTACAGAGATTTT
ATGATAAACAAGTACAGGGAAGAGCCTTCGAGGAGGCTGACATTCACCCA
AGTGAGAAAATCACTGGTGGGTGACGTTAGTTTGCTCCACAAGGTCTTTA
GATTGTTGGACGAGTGGGGTTTGATCAATTTTGGTGCAGTATCGCGTGGT
GATGATAGTGATAATAGAGACAGCAGCTTAGGGGATACAGAGCTTAAGAA
TCAAGTTAAGATTAAGGAAGGAGCCCCCAATGGTGTTCGTGTTGTTGCAT
TGCCCAATTCATTGAAACCCATTTCGGTTCCAAATTCTGGAGCAGATGGT
AGTGGCAATGGTAAAGTGGTAGTGGCAGGTGAGACCGGGGTTTAAATTGC
CTCCCTTGACTTCGTATTTGGATGTTTTTGGTGATTTGGTGAAGTTGAAG
GGGTTTAAGTGCGGTAGTTGTGGCGAGCAGTGTAATTCCGGATGCTATGA
GTATAGCAAGGGTAGTTTTGTAATCTGTGAAAAGTGCTTCAAAAATGGAA
ATTATGGGGAGGACAAGTCCAAGGATGATTTCAGGTTTAGTGACCTAGGA
GGAAACAGTCTTACTCATGGAGCTACTTGGACTGAGGCAGAAACTCTACT
TCTTTTGGAATCTGTTATGAGNNN
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