CK932690

Overview
NameCK932690
Unique NameCK932690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOLA_ORYSJ (DNA polymerase alpha catalytic subunit OS=Oryza sativa subsp. japonica GN=Os01g0868300 PE=2 SV=2)

HSP 1 Score: 366.696 bits (940), Expect = 8.126e-101
Identity = 183/250 (73.20%), Postives = 212/250 (84.80%), Query Frame = 1
Query:    4 VLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTYVKETKMAKQRINHGVEDRNVEELTNEDANFDNDTSHNDR 753
            VL  ESSERALLNRLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPS+MWSKIGRL+RS MP+L KG T++GSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLTQLA+TQL K+RKEV PHD+  MFQ+  +L++L+EYGETDA L++ELMFHLSVLPLTRQLTNISGNLWGKTLQG+RAQRVEYLLLHAFHA+K+IVPDKF   KE    K+++N   E    +E    D + D++  H D+
Sbjct:  650 VLALESSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSNMWSKIGRLRRSVMPRLTKGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKERKEVSPHDIPPMFQSSGALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQRVEYLLLHAFHARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDE---ADPSIDDEGHHVDQ 896          
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOLA_ARATH (DNA polymerase alpha catalytic subunit OS=Arabidopsis thaliana GN=POLA PE=3 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 9.934e-99
Identity = 182/251 (72.51%), Postives = 215/251 (85.66%), Query Frame = 1
Query:    4 VLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTY-VKETKMAKQRINHGVEDRNVEELTNEDANFDNDTSHNDR 753
            VL  E+SERALLNRL +EL KLDSD+LVGHNISGFDLDVLL RAQ C+V SSMWSKIGRLKRS MPKL KG + +GSGA+PG+MSCIAGRLLCDT LCSRDLL+EVSYSLT L+KTQLN+DRKE+ P+D+ KMFQ+ ++L+ELIE GETDAWLSMELMFHLSVLPLT QLTNISGNLWGKTLQGARAQR+EY LLH FH+KK+I+PDK +  +KE K +K+R+++  EDRNV+EL + D   +ND S   +
Sbjct:  642 VLSIENSERALLNRLFLELNKLDSDILVGHNISGFDLDVLLQRAQACKVQSSMWSKIGRLKRSFMPKL-KGNSNYGSGATPGLMSCIAGRLLCDTDLCSRDLLKEVSYSLTDLSKTQLNRDRKEIAPNDIPKMFQSSKTLVELIECGETDAWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARAQRIEYYLLHTFHSKKFILPDKISQRMKEIKSSKRRMDYAPEDRNVDEL-DADLTLENDPSKGSK 890          
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOLA_OXYNO (DNA polymerase alpha catalytic subunit OS=Oxytricha nova PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.132e-44
Identity = 93/204 (45.59%), Postives = 138/204 (67.65%), Query Frame = 1
Query:   25 ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRK---GRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDK 627
            ER L+   + ++Y+LD D++V HN+ G   D+LL R Q+ ++  S WS+IGRLK++++P  +    G    GS   P  ++C  GRLL DTFL +++L+RE +Y LT LAK QL KDR +     +   +  +  L +LI++ E DA+L+++LM HL V+PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F  KK+++PDK
Sbjct:  607 ERQLIEAFVAKIYQLDPDLMVAHNLCGGMFDLLLARIQMLKI--SHWSRIGRLKKNQIPNKKSDQSGANYGGSQWIPRQVTC--GRLLVDTFLTAKELIRETNYDLTHLAKVQLQKDRIDFDDDLLPTFYVQMAKLFQLIDHTEKDAYLTLQLMNHLQVIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFVLPDK 806          
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOLA_OXYTR (DNA polymerase alpha catalytic subunit OS=Oxytricha trifallax PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.722e-42
Identity = 93/205 (45.37%), Postives = 140/205 (68.29%), Query Frame = 1
Query:   22 SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRK---GRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDK 627
            +ER ++   + +++ +D D++V HN+ G   D+LL R Q  +V  + WS+IGRLK++++P  +    G +  GS   P  ++C  GRLL DTFL +++L+RE SY LT LAK QL KDR++     +  ++ T E L  LI++ E DA+L+++LM HL+++PLT QLTNI+GNLW ++LQ ARA+R E LLLH F  KK+I+PDK
Sbjct:  632 NERQMIEAFIAKVFIVDPDLVVAHNLCGGMFDLLLARIQYLKV--NHWSRIGRLKKTQIPNKKLDFGGSSYGGSQWIPRQVTC--GRLLVDTFLSAKELVRETSYDLTYLAKVQLKKDRQDFDDELLPTLYITSERLFSLIDHTEKDAYLTIQLMNHLAIIPLTLQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPDK 832          
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOLA_HUMAN (DNA polymerase alpha catalytic subunit OS=Homo sapiens GN=POLA1 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.837e-42
Identity = 95/232 (40.95%), Postives = 146/232 (62.93%), Query Frame = 1
Query:   19 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTYVKETKMAKQRINHGVEDRNVEELTNE 714
            ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R  +   ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R++R E+LLLHAF+   YIVPDK  + K     +Q++  G ED  ++  TN+
Sbjct:  613 ATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSNMPKLG-GRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRK----PQQKL--GDEDEEIDGDTNK 829          
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOLA_RAT (DNA polymerase alpha catalytic subunit (Fragment) OS=Rattus norvegicus GN=Pola1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.236e-41
Identity = 93/232 (40.09%), Postives = 140/232 (60.34%), Query Frame = 1
Query:   19 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTYVKETKMAKQRINHGVEDRNVEELTNE 714
            ++ER LL   + +++KLD D+LVGHNI GF+L+VLL R   C+VP   WSKIGRL+RS MPKL       GS +  G  +   GR++CD  +  ++L+   SY L++L +  L  +R  +   ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R++R E+LLLHAF+   YIVPDK  +       K +   G ED  ++  TN+
Sbjct:  620 ATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVP--FWSKIGRLRRSNMPKL-------GSRSGFGERNATCGRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSEPSHLLYLLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIF------RKPQQKPGDEDEEIDGDTNK 836          
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOLA_MOUSE (DNA polymerase alpha catalytic subunit OS=Mus musculus GN=Pola1 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.690e-40
Identity = 91/232 (39.22%), Postives = 143/232 (61.64%), Query Frame = 1
Query:   19 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTYVKETKMAKQRINHGVEDRNVEELTNE 714
            ++ER L+   + +++K+D D+LVGHNI  F+L+VLL R   C+VP   WSKIGRL+RS MPKL       GS +  G  +   GR++CD  + +++L+   SY L++L +  L  +R  +   ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R++R E+LLLHAF+   YIVPDK  + K     +Q++  G ED  ++  TN+
Sbjct:  617 ATERTLIGFFLAKVHKIDPDILVGHNICSFELEVLLQRINECKVP--YWSKIGRLRRSNMPKL-------GSRSGFGERNATCGRMICDVEISAKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSESSYLLYLLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRK----PQQKL--GDEDEEIDGDTNK 833          
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOLA_XENLA (DNA polymerase alpha catalytic subunit OS=Xenopus laevis GN=pola1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.509e-38
Identity = 87/207 (42.03%), Postives = 129/207 (62.32%), Query Frame = 1
Query:   22 SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTYVK 642
            +ER LL   + +++K+D DV+VGH+I GFDL+VLL R   C+VP   WSKIGRL+RS MPKL  GR+ F         +   GR++CD  + +++L+R  SY L++L    L  +R  + P ++   +     L+ ++E    DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R++R EYLLLHAF    +IVPDK  + K
Sbjct:  614 TERTLLGFFLAKIHKIDPDVIVGHDIYGFDLEVLLQRINSCKVP--FWSKIGRLRRSVMPKLG-GRSGFAE------RNAACGRIICDIEISAKELIRCKSYHLSELVHQILKAERVVIPPENIRNAYNDSVHLLYMLENTWIDAKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFTENNFIVPDKPVFKK 811          
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOLA_DICDI (DNA polymerase alpha catalytic subunit OS=Dictyostelium discoideum GN=pola1 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.339e-37
Identity = 90/225 (40.00%), Postives = 130/225 (57.78%), Query Frame = 1
Query:   19 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL-CSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTYVKETKM-----AKQRINH 675
            +SER LL+     +   D DV  GHNI G+D++V+L R +  +V    W+ IGRLKRS   +                   I+GRL+CD++L C   L +E +YSL +L+K QL+ ++ E+    +   F+T + L   IE  E D ++   L+F L V PLT+QLTN++GN W K+L+  RA+R+EYLLLH FH KKY++PDK  Y K +       AK + NH
Sbjct:  681 TSERNLLSFFCETVLNADPDVFAGHNIIGYDIEVILDRLEKLKVME--WAFIGRLKRSSFDRFNH----------------ISGRLICDSYLVCKEFLPKEKNYSLVELSKNQLSINKPEINYLSIEPYFETTKKLNIFIEINENDCYIIFLLIFKLLVFPLTKQLTNLAGNQWDKSLKSNRAERIEYLLLHNFHEKKYLLPDKI-YQKSSSSGGGGGAKDKDNH 886          
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOLA_LEIDO (DNA polymerase alpha catalytic subunit OS=Leishmania donovani PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 83/235 (35.32%), Postives = 125/235 (53.19%), Query Frame = 1
Query:   19 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ----LNKDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTYVKETKMAKQRINHGVEDRNVEE 702
            ++ERALL+ L  +L K+D+D+++GHN  GF LD+LL R Q   + S  WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L  LA       + K      P   +    M      + +++      A LS  ++ HL V+ LT++LT I+GNLW +TL GAR++R+EYLLLH FH  K+I PD++          Q    G +D   E+
Sbjct:  507 ANERALLDWLAQQLGKIDADMMIGHNFLGFTLDILLRRYQELSISS--WSTIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLLSLADQMQLQGITKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDRYV---------QNFKRGRDDEEEED 725          
The following BLAST results are available for this feature:
BLAST of CK932690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DPOLA_ORYSJ8.126e-10173.20DNA polymerase alpha catalytic subunit OS=Oryza sa... [more]
DPOLA_ARATH9.934e-9972.51DNA polymerase alpha catalytic subunit OS=Arabidop... [more]
DPOLA_OXYNO9.132e-4445.59DNA polymerase alpha catalytic subunit OS=Oxytrich... [more]
DPOLA_OXYTR1.722e-4245.37DNA polymerase alpha catalytic subunit OS=Oxytrich... [more]
DPOLA_HUMAN3.837e-4240.95DNA polymerase alpha catalytic subunit OS=Homo sap... [more]
DPOLA_RAT7.236e-4140.09DNA polymerase alpha catalytic subunit (Fragment) ... [more]
DPOLA_MOUSE4.690e-4039.22DNA polymerase alpha catalytic subunit OS=Mus musc... [more]
DPOLA_XENLA1.509e-3842.03DNA polymerase alpha catalytic subunit OS=Xenopus ... [more]
DPOLA_DICDI6.339e-3740.00DNA polymerase alpha catalytic subunit OS=Dictyost... [more]
DPOLA_LEIDO2.852e-2935.32DNA polymerase alpha catalytic subunit OS=Leishman... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932690 ID=CK932690; Name=CK932690; organism=Citrus sinensis; type=EST; length=784bp
GGGGTTTTATGCTGTGAAAGCAGTGAGAGAGCCTTGTTAAACCGTTTGAT
GATTGAATTATACAAGTTGGACAGTGATGTTCTTGTTGGACACAATATAT
CTGGGTTTGACCTTGATGTTCTCCTTCACAGAGCCCAGGTTTGTAGAGTG
CCTAGCAGCATGTGGTCAAAGATTGGCCGTCTCAAGCGTTCTGAAATGCC
AAAGCTTAGAAAAGGAAGAACCATTTTTGGATCTGGAGCAAGTCCAGGGA
TCATGTCTTGCATTGCTGGTCGGCTCTTATGTGACACATTTTTGTGTTCA
CGTGACCTATTAAGAGAGGTCAGTTATTCTTTGACACAACTTGCAAAAAC
TCAGTTGAACAAAGACCGGAAGGAGGTTGGCCCACATGATGTTCTGAAAA
TGTTCCAAACGTTGGAATCTCTTATGGAACTTATTGAATATGGTGAAACA
GATGCATGGTTATCTATGGAGCTCATGTTCCATTTGAGTGTTCTTCCCCT
CACTCGACAACTGACAAACATCAGTGGTAATCTTTGGGGGAAAACCCTTC
AAGGTGCTAGGGCACAGAGAGTGGAGTATCTTCTATTACATGCATTCCAT
GCAAAGAAATATATTGTCCCAGACAAGTTTACATATGTTAAGGAAACAAA
AATGGCAAAGCAGAGAATCAATCATGGTGTTGAGGATAGAAATGTTGAAG
AGTTAACTAATGAAGATGCAAACTTTGACAATGATACTTCACACAATGAC
CGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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