CK932691

Overview
NameCK932691
Unique NameCK932691
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6053 contig Csv1_Contig6053:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932691 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.442e-64
Identity = 130/204 (63.73%), Postives = 142/204 (69.61%), Query Frame = 3
Query:   84 MASMISTNCAQFSGLRRSSPT---------QSYSQHVNXXXXXXXXXXXXXXXXXXXXXXXN--KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCF 662
            MA+   T    FSGLRR SP          QS+   VN                          KFFVGGNWKCNGTK+SI KL+SDLN A LE          FVYIDQVK+SLTDRI+I+ QNSWVGKGGAFTGEISVEQLKD+GCKWV+LGHSERRHVIGE D+FIGKKAAYALSEGLGVIACIGE+L+EREAGKTFDVCF
Sbjct:    1 MAATSLTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPRGVVAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCF 204          
BLAST of CK932691 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.970e-63
Identity = 122/182 (67.03%), Postives = 134/182 (73.63%), Query Frame = 3
Query:  117 FSGLRRSSPTQSYSQHVNXXXXXXXXXXXXXXXXXXXXXXXNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCF 662
            +SGLRRS P    S                            KFFVGGNWKCNGTK+ I+KLVSDLN AKLE          F+Y+DQVK+SLTDRIEI+ QNSWV KGGAFTGEISVEQLKDIG KWV+LGHSERRHVIGEDDQFIGKKAAYAL+EGLGVIACIGE+L+EREAGKTFDVC+
Sbjct:   22 YSGLRRSCPKLDQSHSSLFQHLSLSSSSRKASRAVVAMAGTGKFFVGGNWKCNGTKDLISKLVSDLNSAKLEPDVDVVVAPPFLYLDQVKSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCY 203          
BLAST of CK932691 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.224e-61
Identity = 125/199 (62.81%), Postives = 143/199 (71.86%), Query Frame = 3
Query:   90 SMISTNCAQFSGLRRS--------SPTQSYSQHVNXXXXXXXXXXXXXXXXXXXXXXXNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCF 662
            S +ST   QFSGLRRS        S   S+ Q+V+                        KFFVGGNWKCNGTKESITKLVSDLN A LE          FVYIDQVK+SLT R+EI+AQN W+GKGGAFTGEISVEQLKD+GC+WV+LGHSERRHVIGE ++FIGKKAAYAL++G+GVIACIGE L+EREAGKTFDVC+
Sbjct:   17 SAVST---QFSGLRRSFLKLENSVSTQSSFFQNVDSHLRLSSSSRRCPRGVVAMAGS-GKFFVGGNWKCNGTKESITKLVSDLNSATLEADVDVVVAPPFVYIDQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCY 211          
BLAST of CK932691 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.354e-60
Identity = 110/140 (78.57%), Postives = 123/140 (87.86%), Query Frame = 3
Query:  243 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCF 662
            KFFVGGNWKCNGTKESI+KLVSDLN A LE          F+YIDQVK+SLTDRIE++AQN+W+GKGGAFTGEIS EQL DIGC+WV+LGHSERRHVIGEDD+FIGKKAAYALS+ L V+ACIGE L+EREAGKTFDVCF
Sbjct:   48 KFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPPFIYIDQVKSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCF 187          
BLAST of CK932691 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.749e-44
Identity = 83/142 (58.45%), Postives = 105/142 (73.94%), Query Frame = 3
Query:  243 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCF 662
            KFFVGGNWKCNGT+ES++K+V  LN+  +             +V++      L   I++AAQN WV KGGAFTGE+S + L ++G  WV+LGHSERR ++GE ++F+GKKAAYA SEGLGVIACIGE L+EREAGKTFDVCF
Sbjct:    4 KFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCF 145          
BLAST of CK932691 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 8.537e-39
Identity = 74/140 (52.86%), Postives = 98/140 (70.00%), Query Frame = 3
Query:  243 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDV 656
            KFFVGGNWKCNGT + + K+V  LN+ ++             +V++  VK+ L     +AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE L++REAG T DV
Sbjct:    4 KFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDV 143          
BLAST of CK932691 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.456e-38
Identity = 75/140 (53.57%), Postives = 97/140 (69.29%), Query Frame = 3
Query:  243 KFFVGGNWKCNGTKESITKLVSDLN--DAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDV 656
            KFFVGGNWKCNGT E + K+++ LN  D   +          +V++  VKN L     +AAQN WV KGGAFTGE+S E L ++   WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE L+ERE+G T DV
Sbjct:    4 KFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDV 143          
BLAST of CK932691 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.902e-38
Identity = 76/140 (54.29%), Postives = 99/140 (70.71%), Query Frame = 3
Query:  243 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDV 656
            KFFVGGNWKCNGT E + K+V+ LN+A++  E          +V++  VKN L     +AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++ E ++F+G K AYALS+GL VIAC+GE L++REAG T  V
Sbjct:    4 KFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISV 143          
BLAST of CK932691 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.902e-38
Identity = 79/140 (56.43%), Postives = 95/140 (67.86%), Query Frame = 3
Query:  243 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCF 662
            KFFVGGNWK NG K+SI +L + LN AKL            +Y+D  ++ L   I++AAQN +    GAFTGEIS   +KD G KWV+LGHSERRHV GE D+ IG+K A+AL  GLGVIACIGE+L EREAG T  V F
Sbjct:    5 KFFVGGNWKMNGDKKSIEELANTLNSAKLNPDTEVVCGAPTIYLDYARSKLDPNIDVAAQNCYKVAKGAFTGEISPAMIKDCGVKWVILGHSERRHVFGESDELIGQKVAHALENGLGVIACIGEKLDEREAGITEKVVF 144          
BLAST of CK932691 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.244e-38
Identity = 73/140 (52.14%), Postives = 99/140 (70.71%), Query Frame = 3
Query:  243 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDV 656
            KFFVGGNWKCNGT + + K+V  LN+ ++             +V++  VK+ L   I++AAQN WV KGGAFTGE+S E L ++   WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE L++RE+G T DV
Sbjct:    4 KFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDV 143          
The following BLAST results are available for this feature:
BLAST of CK932691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_ARATH3.442e-6463.73Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_FRAAN4.970e-6367.03Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIC_SPIOL1.224e-6162.81Triosephosphate isomerase, chloroplastic OS=Spinac... [more]
TPIC_SECCE1.354e-6078.57Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIS_STELP6.749e-4458.45Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_MAIZE8.537e-3952.86Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_PETHY1.456e-3853.57Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_COPJA1.902e-3854.29Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPISB_DANRE1.902e-3856.43Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_ORYSJ3.244e-3852.14Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_H01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932691 ID=CK932691; Name=CK932691; organism=Citrus sinensis; type=EST; length=663bp
GGGGACACAAAGGCTCATCAAGAGGAAGGGCAAGAGCCAACGCAGCTGNN
ATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGATCTC
CACAAACTGCGCTCAATTCTCCGGCTTGCGCCGCTCATCGCCCACACAGT
CTTATTCACAGCACGTCAACTCTCACCTCCGCCTTGTCTCTTCTCGTAGA
CCTCGCCGTAGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCTT
TGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAGTCTATCACCAAGC
TTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCTGATGTTGATGTTGTG
GTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAGA
TAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGGTGGAGCAT
TTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCTGCAAGTGG
GTTGTTTTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAAGATGATCA
GTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTCA
TAGCTTGTATCGGGGAACAGTTGCAAGAAAGAGAAGCAGGGAAAACTTTT
GATGTCTGTTTTC
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