CK932696

Overview
NameCK932696
Unique NameCK932696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932696_ssr204 microsatellite CK932696_ssr204:204..213. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7663 contig Csv1_Contig7663:8..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK932696 vs. ExPASy Swiss-Prot
Match: RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.348e-23
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:   79 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQV 282
            MGVFT+VC+  GG WS KQ EG +LE+SA+STYELQRKLVQ SLSADSSGGVQSSFSLV+PTSAVFQV
Sbjct:    1 MGVFTFVCKNGGGAWSAKQHEG-ELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSPTSAVFQV 67
[Close]
BLAST of CK932696 vs. ExPASy Swiss-Prot
Match: RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.083e-22
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:   79 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQV 282
            MGVF++VC+  GGEW+ KQ EG DLEASA+STY+LQRKLVQT+LSADSSGGVQSSFSLV+PTSAVF V
Sbjct:    1 MGVFSFVCKSKGGEWTAKQHEG-DLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSPTSAVFVV 67
[Close]
BLAST of CK932696 vs. ExPASy Swiss-Prot
Match: RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 7.263e-19
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:   79 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQV 282
            MGV+T+VCR NGGEW+ KQ   G++EASAA+ YELQR+LV  + +ADS  GVQSSFS+VTP+SAVFQV
Sbjct:    1 MGVYTFVCRNNGGEWTAKQ-HSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTPSSAVFQV 67
[Close]
BLAST of CK932696 vs. ExPASy Swiss-Prot
Match: RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.239e-18
Identity = 52/120 (43.33%), Postives = 68/120 (56.67%), Query Frame = 1 
Query:   79 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDMGFSLFD 438
            MGV+T+VCR +G EW+ KQ++G +LEASAA+ YELQR+LV  + +ADS+ GVQSSFS+V+P+SAVFQV                                           DD+GFSLFD
Sbjct:    1 MGVYTFVCRSSGDEWTAKQLKG-ELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSPSSAVFQVIIGAVGGGAAIGGGAAAGAASGGAAAEAPKAEEKKEEEKEESEDDLGFSLFD 119
The following BLAST results are available for this feature:
BLAST of CK932696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RLA31_ARATH6.348e-2380.8860S acidic ribosomal protein P3-1 OS=Arabidopsis t... [more]
RLA32_ARATH1.083e-2279.4160S acidic ribosomal protein P3-2 OS=Arabidopsis t... [more]
RLA3_MAIZE7.263e-1967.6560S acidic ribosomal protein P3 OS=Zea mays GN=RPP... [more]
RLA3_ORYSJ1.239e-1843.3360S acidic ribosomal protein P3 OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004530_G01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932696 ID=CK932696; Name=CK932696; organism=Citrus sinensis; type=EST; length=645bp
GGGGGAGGAAGAAGAGCCGTCGTCTCTGTTTATCTAGTACATTGTGCCGC
TCAAAGACAAAAAGAATATCAAGTGAAAATGGGAGTTTTCACATACGTGT
GCAGAAAAAATGGGGGAGAATGGAGCGGAAAGCAGATAGAGGGGGGAGAC
TTAGAAGCCTCCGCAGCATCAACATACGAGCTCCAGAGAAAGCTGGTCCA
GACCTCTCTCTCTGCTGATTCTTCTGGTGGGGTCCAGTCCTCTTTCTCCC
TCGTCACACCTACGTCTGCTGTTTTCCAGGTGATTATTGGTGGTGCTGTT
GGTAGTGGTTTCATTGGAGGTGGAGCTGCAGCTTCAGCCCCTTCAGGAGG
CGGTGGAGCAGCTGCTGAGGCTCCTGCTGCTGAGGAGAAGAAGGAAGAGA
AAGAGGAGAGTGATGACATGGGTTTCTCTCTTTTTGATTAGGTTATATAA
TTCCAGTTCTCTTCTTGGGACTTGTATTTTGTTATGCTTTTATGTCGACT
CAAAAATTGCTCTGCCATTGGCTTAGATTTTATTTTTGTGAGAGTTTTGT
TACTTTGTGAGGGATTTTTGTCCACCATCAATATTAAGTAAACATGATTA
GCTTGCTAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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