CK932697

Overview
NameCK932697
Unique NameCK932697
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1472 contig Csv1_Contig1472:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932697 vs. ExPASy Swiss-Prot
Match: RUXE_DANRE (Small nuclear ribonucleoprotein E OS=Danio rerio GN=snrpe PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.399e-29
Identity = 59/81 (72.84%), Postives = 73/81 (90.12%), Query Frame = 1
Query:  157 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 399
            KVQ++M QPINLIFR+LQ+++RI +WL+EQ ++RIEG IIGFDEYMNLVLDDAEEVH+K   RKPLGRI+LKGDNITL+ +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQS 89          
BLAST of CK932697 vs. ExPASy Swiss-Prot
Match: RUXE_PIG (Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.944e-29
Identity = 58/81 (71.60%), Postives = 73/81 (90.12%), Query Frame = 1
Query:  157 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 399
            KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K  +RK LGRI+LKGDNITL+ +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89          
BLAST of CK932697 vs. ExPASy Swiss-Prot
Match: RUXE_MOUSE (Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.944e-29
Identity = 58/81 (71.60%), Postives = 73/81 (90.12%), Query Frame = 1
Query:  157 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 399
            KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K  +RK LGRI+LKGDNITL+ +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89          
BLAST of CK932697 vs. ExPASy Swiss-Prot
Match: RUXE_HUMAN (Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.944e-29
Identity = 58/81 (71.60%), Postives = 73/81 (90.12%), Query Frame = 1
Query:  157 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 399
            KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K  +RK LGRI+LKGDNITL+ +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89          
BLAST of CK932697 vs. ExPASy Swiss-Prot
Match: RUXE_CHICK (Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.944e-29
Identity = 58/81 (71.60%), Postives = 73/81 (90.12%), Query Frame = 1
Query:  157 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 399
            KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K  +RK LGRI+LKGDNITL+ +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89          
BLAST of CK932697 vs. ExPASy Swiss-Prot
Match: RUXE_BOVIN (Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.944e-29
Identity = 58/81 (71.60%), Postives = 73/81 (90.12%), Query Frame = 1
Query:  157 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 399
            KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K  +RK LGRI+LKGDNITL+ +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89          
BLAST of CK932697 vs. ExPASy Swiss-Prot
Match: RUXE_DROME (Probable small nuclear ribonucleoprotein E OS=Drosophila melanogaster GN=CG18591 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.446e-28
Identity = 56/81 (69.14%), Postives = 71/81 (87.65%), Query Frame = 1
Query:  157 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 399
            KVQ++M QPINLIFR+LQ+++R+Q+WL+E   LRIEG I+GFDEYMNLVLDDAEEV++K   R+ LGRI+LKGDNITL+ N
Sbjct:    8 KVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTRQRRNLGRIMLKGDNITLIQN 88          
BLAST of CK932697 vs. ExPASy Swiss-Prot
Match: RUEL1_HUMAN (Putative small nuclear ribonucleoprotein polypeptide E-like protein 1 OS=Homo sapiens GN=SNRPEL1 PE=5 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.879e-28
Identity = 56/81 (69.14%), Postives = 73/81 (90.12%), Query Frame = 1
Query:  157 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 399
            KVQ++M QPINLIFR+LQ++++IQ+WL+EQ +++IEG IIGFDEYMNLVLDDAEE+H K  +RK LGRI+LKGDNITL+ +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89          
BLAST of CK932697 vs. ExPASy Swiss-Prot
Match: RUXE_CAEBR (Probable small nuclear ribonucleoprotein E OS=Caenorhabditis briggsae GN=snr-6 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.312e-24
Identity = 50/83 (60.24%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  145 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 393
            M+  K+Q++M QP+NLIFR+LQ++ R+QIWL+E    R+EG IIGFDE+MN+V D+AEEV++K   R  +GRILLKGDNITL+
Sbjct:    1 MSQRKIQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLI 83          
BLAST of CK932697 vs. ExPASy Swiss-Prot
Match: RUXE_CAEEL (Probable small nuclear ribonucleoprotein E OS=Caenorhabditis elegans GN=snr-6 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.147e-23
Identity = 49/83 (59.04%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  145 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 393
            M++ K+ ++M QP+NLIFR+LQ++ R+QIWL+E    R+EG IIGFDE+MN+V D+AEEV++K   R  +GRILLKGDNITL+
Sbjct:    1 MSTRKLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLI 83          
The following BLAST results are available for this feature:
BLAST of CK932697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RUXE_DANRE1.399e-2972.84Small nuclear ribonucleoprotein E OS=Danio rerio G... [more]
RUXE_PIG6.944e-2971.60Small nuclear ribonucleoprotein E OS=Sus scrofa GN... [more]
RUXE_MOUSE6.944e-2971.60Small nuclear ribonucleoprotein E OS=Mus musculus ... [more]
RUXE_HUMAN6.944e-2971.60Small nuclear ribonucleoprotein E OS=Homo sapiens ... [more]
RUXE_CHICK6.944e-2971.60Small nuclear ribonucleoprotein E OS=Gallus gallus... [more]
RUXE_BOVIN6.944e-2971.60Small nuclear ribonucleoprotein E OS=Bos taurus GN... [more]
RUXE_DROME3.446e-2869.14Probable small nuclear ribonucleoprotein E OS=Dros... [more]
RUEL1_HUMAN5.879e-2869.14Putative small nuclear ribonucleoprotein polypepti... [more]
RUXE_CAEBR2.312e-2460.24Probable small nuclear ribonucleoprotein E OS=Caen... [more]
RUXE_CAEEL1.147e-2359.04Probable small nuclear ribonucleoprotein E OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_G02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932697 ID=CK932697; Name=CK932697; organism=Citrus sinensis; type=EST; length=610bp
GCGGGGACTAATCAAAACCTAGAACTCTACGNNNTCGTCCCCTTCTTGCA
TAAGTCAAAGTCCTTATACTGAAAAGCGCTTTCGCTCCCGCTAGGGTTTT
TCGTCTCTTGAATTCTCAAGCGTATCTCTGTGAATTCGATAGCAATGGCG
AGCACCAAAGTTCAGAGGATTATGACTCAGCCCATTAATTTGATTTTCAG
GTTCCTTCAAAGCAAAGCTCGCATTCAGATTTGGCTTTTTGAGCAGAAGG
ATTTGAGGATTGAAGGCCGAATTATTGGTTTTGATGAGTACATGAACTTG
GTTTTGGATGATGCTGAAGAGGTTCACATCAAGAAAAATACCAGAAAGCC
ATTAGGAAGGATTCTTCTCAAAGGAGACAACATAACTCTTATGATGAACA
CGGGGAAGTGATGATGGTCATTCTGGAAATCTTGTCGTCTGTCATTGGTT
GAGCCATTTAGAGTGTATTGCTATCTTTGATGTTTGAATACTTAACTGGA
TTTCTATATGATAAGGTGATATTATATTCAGTCCATTTAATAGTCACTGT
CATTGCCCTTTTAGGGTTTATAATACCCTGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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