CK932702

Overview
NameCK932702
Unique NameCK932702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932702_ssr109 microsatellite CK932702_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1474 contig Csv1_Contig1474:1..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932702 vs. ExPASy Swiss-Prot
Match: PPIC_SALTY (Peptidyl-prolyl cis-trans isomerase C OS=Salmonella typhimurium GN=ppiC PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.374e-13
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  310 HLLVKEDDLNLLSELQRRVSQGGDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP-LNKVARCKTKFGWHLLQVL 558
            H+LVKE+ L L  +L  ++  GGD   LA +HSICPS  +GG LG  R+GQ+VP F++V F+ P L       T+FG+H+++VL
Sbjct:    9 HILVKEEKLAL--DLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 90          
BLAST of CK932702 vs. ExPASy Swiss-Prot
Match: PPIC_SALTI (Peptidyl-prolyl cis-trans isomerase C OS=Salmonella typhi GN=ppiC PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.374e-13
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  310 HLLVKEDDLNLLSELQRRVSQGGDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP-LNKVARCKTKFGWHLLQVL 558
            H+LVKE+ L L  +L  ++  GGD   LA +HSICPS  +GG LG  R+GQ+VP F++V F+ P L       T+FG+H+++VL
Sbjct:    9 HILVKEEKLAL--DLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 90          
BLAST of CK932702 vs. ExPASy Swiss-Prot
Match: SURA_LEGPL (Chaperone surA OS=Legionella pneumophila (strain Lens) GN=surA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.178e-12
Identity = 41/124 (33.06%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  304 VQHLLVKEDDLNLLSE-------LQRRVSQGGDLSDLAVEHSI-CPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 648
            V+H+L+K D   + SE       + R++  G D + +A ++S+   S  +GG LGWV  G+LVPEFE+   + PL+KV++  KT++GWHL++V++ R+    +  +  ++ + +Q   F +  Q
Sbjct:  286 VRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 409          
BLAST of CK932702 vs. ExPASy Swiss-Prot
Match: SURA_LEGPH (Chaperone surA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=surA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.178e-12
Identity = 41/124 (33.06%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  304 VQHLLVKEDDLNLLSE-------LQRRVSQGGDLSDLAVEHSI-CPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 648
            V+H+L+K D   + SE       + R++  G D + +A ++S+   S  +GG LGWV  G+LVPEFE+   + PL+KV++  KT++GWHL++V++ R+    +  +  ++ + +Q   F +  Q
Sbjct:  286 VRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 409          
BLAST of CK932702 vs. ExPASy Swiss-Prot
Match: SURA_LEGPA (Chaperone surA OS=Legionella pneumophila (strain Paris) GN=surA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.178e-12
Identity = 41/124 (33.06%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  304 VQHLLVKEDDLNLLSE-------LQRRVSQGGDLSDLAVEHSI-CPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 648
            V+H+L+K D   + SE       + R++  G D + +A ++S+   S  +GG LGWV  G+LVPEFE+   + PL+KV++  KT++GWHL++V++ R+    +  +  ++ + +Q   F +  Q
Sbjct:  286 VRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 409          
BLAST of CK932702 vs. ExPASy Swiss-Prot
Match: PPIC_ECOLI (Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli (strain K12) GN=ppiC PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  310 HLLVKEDDLNLLSELQRRVSQGGDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP-LNKVARCKTKFGWHLLQVL 558
            H+LVKE+ L L  +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP F++V F+ P L       T+FG+H+++VL
Sbjct:    9 HILVKEEKLAL--DLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 90          
BLAST of CK932702 vs. ExPASy Swiss-Prot
Match: PPIC_ECOL6 (Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli O6 GN=ppiC PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  310 HLLVKEDDLNLLSELQRRVSQGGDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP-LNKVARCKTKFGWHLLQVL 558
            H+LVKE+ L L  +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP F++V F+ P L       T+FG+H+++VL
Sbjct:    9 HILVKEEKLAL--DLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 90          
BLAST of CK932702 vs. ExPASy Swiss-Prot
Match: PPIC_ECO57 (Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli O157:H7 GN=ppiC PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  310 HLLVKEDDLNLLSELQRRVSQGGDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP-LNKVARCKTKFGWHLLQVL 558
            H+LVKE+ L L  +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP F++V F+ P L       T+FG+H+++VL
Sbjct:    9 HILVKEEKLAL--DLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 90          
BLAST of CK932702 vs. ExPASy Swiss-Prot
Match: SURA_METCA (Chaperone surA OS=Methylococcus capsulatus GN=surA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.428e-12
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  304 VQHLLVK-------EDDLNLLSELQRRVSQGGDLSDLAVEHSICPSKG---EGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREAS----LLQDIQPDELHKKMQD 624
            V+H+L++       ED  N L  L+ R+  G D ++LA  HS    KG   +GG LGWV+ G LVP FEE       N+++   +T+FGWHL+QVL  +E+S    +L++   DEL K+  D
Sbjct:  292 VRHILIRPNEVLSDEDAKNKLLALKTRIENGDDFAELARGHS--DDKGSAIKGGDLGWVKPGALVPPFEEAMNALDENQLSDPVQTQFGWHLIQVLERQESSDTNEVLKNRARDELFKRKVD 411          
BLAST of CK932702 vs. ExPASy Swiss-Prot
Match: SURA_NITOC (Chaperone surA OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=surA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.974e-12
Identity = 38/123 (30.89%), Postives = 70/123 (56.91%), Query Frame = 1
Query:  307 QHLLVKEDDLNL-------LSELQRRVSQGGDLSDLAVEHSICPSKG-EGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 648
            +H+L++ D+L         LS+L++R+  G D S+LA  HS   +   +GG LGWV  GQ++P FEE   +    +++   KT+FGWH++QVL  R+ ++ ++   +    +++     +E +
Sbjct:  286 RHILLRADELASEREVQLRLSQLRQRILSGDDFSELAQAHSDDKASALKGGDLGWVSPGQMIPRFEEAMRSLEPGEISEPFKTQFGWHVVQVLDRRQENMTEEFNRNRAKMEIRQRKVEEELE 408          
The following BLAST results are available for this feature:
BLAST of CK932702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PPIC_SALTY2.374e-1346.43Peptidyl-prolyl cis-trans isomerase C OS=Salmonell... [more]
PPIC_SALTI2.374e-1346.43Peptidyl-prolyl cis-trans isomerase C OS=Salmonell... [more]
SURA_LEGPL1.178e-1233.06Chaperone surA OS=Legionella pneumophila (strain L... [more]
SURA_LEGPH1.178e-1233.06Chaperone surA OS=Legionella pneumophila subsp. pn... [more]
SURA_LEGPA1.178e-1233.06Chaperone surA OS=Legionella pneumophila (strain P... [more]
PPIC_ECOLI2.010e-1245.24Peptidyl-prolyl cis-trans isomerase C OS=Escherich... [more]
PPIC_ECOL62.010e-1245.24Peptidyl-prolyl cis-trans isomerase C OS=Escherich... [more]
PPIC_ECO572.010e-1245.24Peptidyl-prolyl cis-trans isomerase C OS=Escherich... [more]
SURA_METCA3.428e-1239.34Chaperone surA OS=Methylococcus capsulatus GN=surA... [more]
SURA_NITOC9.974e-1230.89Chaperone surA OS=Nitrosococcus oceani (strain ATC... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_G06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932702 ID=CK932702; Name=CK932702; organism=Citrus sinensis; type=EST; length=820bp
GGGGGATTACACTCNNNANTCAAAGAAGCGATGATGCTAAGAGCAAGTCA
GTTAGCATCGCCTGTGCTCTGTGCTATTACACAGTCTCTGATTCCCACTC
TAAACCTGTCTTCTTCTTCTTCACTTTCAATCTTTCAAAAACCCGCCTCT
TTTGCTTCTTTTTACAAATCCTTAAACCCAGCTTCCAATTCCAATTCTTT
TCATATTCATATTATATCCCGAAGCTTTACATCTCCTAAAGCTGCTTCAT
TTAGTTCTGGGACTGAGGGTAGTAGCCCAGGTGGTGGCGATAGAGAAATA
TTGGTCCAACACTTGCTTGTTAAAGAAGATGACCTCAACCTACTGTCGGA
ACTTCAACGCAGGGTTTCTCAAGGAGGGGATTTGAGTGATCTTGCCGTTG
AACACTCAATTTGTCCGTCCAAAGGAGAGGGAGGAATGCTTGGCTGGGTG
AGGAAGGGGCAATTGGTTCCAGAATTTGAGGAGGTTGCATTCACTACCCC
TTTGAACAAAGTTGCAAGGTGTAAAACAAAATTTGGATGGCACTTGTTGC
AAGTTCTATCTGAGAGGGAAGCGTCATTACTTCAAGACATTCAGCCAGAT
GAACTTCACAAAAAAATGCAGGATCCCAATTTTCATAAAGAGGCACAATT
GATTGATGTTCGAGAGCCTGAAGAAGTTGCCCTTTCTTCTTTGCCGGGAT
TTCAAGTGCTTCCCCTCCGCCAATTTGGAAGCTGGGGACCAGATGTAACT
GCCAAGTTTGATCCTCAGAAGGATACATATGTAATGTGTCACCATGGCAT
GCGGNNNNTACAGGTTGCTC
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