CK932703

Overview
NameCK932703
Unique NameCK932703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2124 contig Csv1_Contig2124:91..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: RBX1A_ARATH (RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.911e-54
Identity = 96/118 (81.36%), Postives = 98/118 (83.05%), Query Frame = 3
Query:   18 MATLDSYVPMVPVGEXXXXXXXXXXXXXXXRFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQVCPLDNSEWEFQKYGH 371
            MATLDS V M+P GE               RFEIKKWSAVALWAWDIVVDNCAICRNHI DLCIECQANQASAT+EECTVAWGVCNHAFHFHCI RWLKTRQVCPLDNSEWEFQKYGH
Sbjct:    1 MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: RBX1_SALSA (RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 7.032e-49
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  108 RFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQVCPLDNSEWEFQKYGH 371
            RFE+KKW+AVALWAWDIVVDNCAICRNHI DLCIECQANQASAT+EECTVAWGVCNHAFHFHCI RWLKTRQVCPLDN EWEFQKYGH
Sbjct:   21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: RBX1_MOUSE (RING-box protein 1 OS=Mus musculus GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.032e-49
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  108 RFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQVCPLDNSEWEFQKYGH 371
            RFE+KKW+AVALWAWDIVVDNCAICRNHI DLCIECQANQASAT+EECTVAWGVCNHAFHFHCI RWLKTRQVCPLDN EWEFQKYGH
Sbjct:   21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: RBX1_HUMAN (RING-box protein 1 OS=Homo sapiens GN=RBX1 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.032e-49
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  108 RFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQVCPLDNSEWEFQKYGH 371
            RFE+KKW+AVALWAWDIVVDNCAICRNHI DLCIECQANQASAT+EECTVAWGVCNHAFHFHCI RWLKTRQVCPLDN EWEFQKYGH
Sbjct:   21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: RBX1A_DROME (RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.567e-48
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  108 RFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQVCPLDNSEWEFQKYGH 371
            RFE+KKW+AVALWAWDIVVDNCAICRNHI DLCIECQANQASAT+EECTVAWGVCNHAFHFHCI RWLKTRQVCPLDN EW+FQKYGH
Sbjct:   21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYGH 108          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: RBX1B_ARATH (RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.015e-47
Identity = 89/118 (75.42%), Postives = 93/118 (78.81%), Query Frame = 3
Query:   18 MATLDSYVPMVPVGEXXXXXXXXXXXXXXXRFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQVCPLDNSEWEFQKYGH 371
            MA+L+S V M   GE               RFE+KKWSAVALWAWDIVVDNCAICRNHI DLCIEC ANQASAT+EECTVAWGVCNHAFHFHCI RWLKTRQVCPLD  EWEFQKYGH
Sbjct:    1 MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: RBX1_CAEEL (RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 9.505e-46
Identity = 77/88 (87.50%), Postives = 80/88 (90.91%), Query Frame = 3
Query:  108 RFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQVCPLDNSEWEFQKYGH 371
            RFE+KKWSAVALWAWDI VDNCAICRNHI DLCIECQANQA+   +ECTVAWG CNHAFHFHCI RWLKTRQVCPLDN EWEFQKYGH
Sbjct:   23 RFEVKKWSAVALWAWDIQVDNCAICRNHIMDLCIECQANQAAGLKDECTVAWGNCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 110          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: RBX1_DICDI (RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.717e-45
Identity = 74/87 (85.06%), Postives = 82/87 (94.25%), Query Frame = 3
Query:  108 RFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQVCPLDNSEWEFQKYG 368
            +FE+K+W+AVALW WDIVVDNCAICRNHI DLCIECQANQAS T+EECTVAWG+CNHAFHFHCI RWLK+RQVCPLDN +WEFQKYG
Sbjct:   17 KFEVKRWNAVALWIWDIVVDNCAICRNHIMDLCIECQANQASNTSEECTVAWGICNHAFHFHCISRWLKSRQVCPLDNRDWEFQKYG 103          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: RBX1_SCHPO (RING-box protein pip1 OS=Schizosaccharomyces pombe GN=pip1 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 8.896e-44
Identity = 74/88 (84.09%), Postives = 77/88 (87.50%), Query Frame = 3
Query:  108 RFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQVCPLDNSEWEFQKYGH 371
            RFEIKKW+AVALW WDIVVDNCAICRNHI DLCIECQAN  SA  +ECTVAWG CNHAFHFHCI RWL TR VCPLDN EWEFQ+YGH
Sbjct:   20 RFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCPLDNREWEFQRYGH 107          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: RBX1B_DROME (RING-box protein 1B OS=Drosophila melanogaster GN=Roc1b PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.053e-36
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 3
Query:  108 RFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQVCPLDNSEWEFQKYG 368
            RF +KKW A A+W WD+ VDNCAICRNHI +LCIECQA+  +A  +ECTVAWG CNHAFH+HCI RWLKTR VCPLDN EW +QKYG
Sbjct:   36 RFVVKKWVAHAMWGWDVAVDNCAICRNHIMNLCIECQADP-NANQDECTVAWGECNHAFHYHCIARWLKTRLVCPLDNKEWVYQKYG 121          
The following BLAST results are available for this feature:
BLAST of CK932703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RBX1A_ARATH1.911e-5481.36RING-box protein 1a OS=Arabidopsis thaliana GN=RBX... [more]
RBX1_SALSA7.032e-4993.18RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=... [more]
RBX1_MOUSE7.032e-4993.18RING-box protein 1 OS=Mus musculus GN=Rbx1 PE=1 SV... [more]
RBX1_HUMAN7.032e-4993.18RING-box protein 1 OS=Homo sapiens GN=RBX1 PE=1 SV... [more]
RBX1A_DROME1.567e-4892.05RING-box protein 1A OS=Drosophila melanogaster GN=... [more]
RBX1B_ARATH1.015e-4775.42RING-box protein 1b OS=Arabidopsis thaliana GN=RBX... [more]
RBX1_CAEEL9.505e-4687.50RING-box protein 1 OS=Caenorhabditis elegans GN=rb... [more]
RBX1_DICDI4.717e-4585.06RING-box protein 1 OS=Dictyostelium discoideum GN=... [more]
RBX1_SCHPO8.896e-4484.09RING-box protein pip1 OS=Schizosaccharomyces pombe... [more]
RBX1B_DROME1.053e-3672.41RING-box protein 1B OS=Drosophila melanogaster GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_E11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932703 ID=CK932703; Name=CK932703; organism=Citrus sinensis; type=EST; length=583bp
GGGGGATCGAGAAAAAAATGGCGACCTTGGACTCATACGTACCGATGGTT
CCAGTCGGAGAGGCATCAAGCAGTGCAGGCCCTTCATCTTCCTCCAAGAA
GCCTAAACGTTTCGAGATCAAAAAGTGGAGCGCCGTCGCCCTCTGGGCTT
GGGATATTGTTGTCGATAATTGTGCGATTTGCAGGAACCACATCAGGGAT
CTCTGCATCGAGTGCCAGGCTAACCAAGCTAGCGCTACAAACGAGGAATG
CACTGTAGCTTGGGGGGTTTGCAACCATGCATTTCACTTTCACTGCATCG
GTCGATGGCTGAAGACTCGTCAAGTTTGTCCATTGGATAACAGTGAGTGG
GAGTTCCAGAAGTATGGTCACTACAGCCTTTGAGCCAGTTGAGTTTTGGA
TTCTGTCTGCTATGTATTGCAGATTTCAAGTAGATATTATGGAAGACCCT
GGACTTTCTGTCAATTCTATTTGATGCTCTTTGTTATCTAAAATTCAGTT
GGTTATGACTTGGATTCTAAATCCTATATATGTTTGTGAAAATTAAGCCA
TAATTTCTGTTTAACTGAGCCCACTTTTTCTTG
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