CK932711

Overview
NameCK932711
Unique NameCK932711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12227 contig Csv1_Contig12227:263..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932711 vs. ExPASy Swiss-Prot
Match: AB1F_ARATH (ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.275e-25
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 2
Query:    2 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAKAGLSD 175
            AEALNEWDGGLVLVSHDFRLINQVAHEIWVCE Q +T+W GDIMDFK HLKAKAGL D
Sbjct:  538 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCEKQCITKWNGDIMDFKRHLKAKAGLED 595          
BLAST of CK932711 vs. ExPASy Swiss-Prot
Match: ABCF2_MOUSE (ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.779e-16
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 2
Query:    2 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 160
            A+A+NE++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K HLK+K
Sbjct:  561 ADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 613          
BLAST of CK932711 vs. ExPASy Swiss-Prot
Match: ABCF2_HUMAN (ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.779e-16
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 2
Query:    2 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 160
            A+A+NE++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K HLK+K
Sbjct:  556 ADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 608          
BLAST of CK932711 vs. ExPASy Swiss-Prot
Match: ABCF2_BOVIN (ATP-binding cassette sub-family F member 2 OS=Bos taurus GN=ABCF2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.191e-16
Identity = 34/53 (64.15%), Postives = 46/53 (86.79%), Query Frame = 2
Query:    2 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 160
            A+A+N+++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K HLK+K
Sbjct:  558 ADAINDFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 610          
BLAST of CK932711 vs. ExPASy Swiss-Prot
Match: ABCF2_DICDI (ABC transporter F family member 2 OS=Dictyostelium discoideum GN=abcF2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.167e-14
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 2
Query:    2 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 160
            A A+N + GG++LVSHDFRLI+QVA EIWVC+N+ +T+W GDI  +K HLKA+
Sbjct:  526 ALAINSFPGGMILVSHDFRLISQVAKEIWVCDNKTITKWAGDITSYKNHLKAQ 578          
BLAST of CK932711 vs. ExPASy Swiss-Prot
Match: YJQ1_SCHPO (Uncharacterized ABC transporter ATP-binding protein C825.01 OS=Schizosaccharomyces pombe GN=SPCC825.01 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.692e-11
Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 2
Query:    2 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLK 154
            A+ALN +DGG+V ++HDFRLI+QVA EIW+ +N  V  ++G+I D+K+ LK
Sbjct:  752 ADALNNFDGGVVFITHDFRLIDQVAEEIWIVQNGTVKEFDGEIRDYKMMLK 802          
The following BLAST results are available for this feature:
BLAST of CK932711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AB1F_ARATH3.275e-2587.93ABC transporter F family member 1 OS=Arabidopsis t... [more]
ABCF2_MOUSE2.779e-1666.04ATP-binding cassette sub-family F member 2 OS=Mus ... [more]
ABCF2_HUMAN2.779e-1666.04ATP-binding cassette sub-family F member 2 OS=Homo... [more]
ABCF2_BOVIN6.191e-1664.15ATP-binding cassette sub-family F member 2 OS=Bos ... [more]
ABCF2_DICDI1.167e-1462.26ABC transporter F family member 2 OS=Dictyostelium... [more]
YJQ1_SCHPO2.692e-1154.90Uncharacterized ABC transporter ATP-binding protei... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004530_F07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932711 ID=CK932711; Name=CK932711; organism=Citrus sinensis; type=EST; length=428bp
TGCTGAGGCATTGAATGAGTGGGATGGGGGTTTGGTTCTCGTCAGCCACG
ATTTCAGGCTCATAAACCAGGTAGCCCATGAAATATGGGTGTGTGAAAAT
CAAGCTGTTACCCGGTGGGAGGGTGACATTATGGACTTCAAGCTGCACCT
GAAGGCGAAGGCTGGTCTATCTGATTGAAAGAAGATCACTGTAGGATGAA
TTTGAAGACAATGTAATAGTGCTGCTATTTTTATTACACATTTGGCTTAA
GACTGTAGTAGGCCAAGTGTTCGCCACCACTGGTCGGTGTTTTTCCCAAG
GTGGATTATGACGAAAGTTTTATGTAGCAGCAGGAGGGACGACGGCTTAT
TTATTGTATGCCGCTGGTTCGTTCCATAATTATCTGCGAAGTTGTTAGGG
GGAAAAAAAAAAAAAAAAAAAAAAAAAA
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