CK932713

Overview
NameCK932713
Unique NameCK932713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932713_ssr39 microsatellite CK932713_ssr39:39..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4344 contig Csv1_Contig4344:1..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 6.543e-81
Identity = 152/172 (88.37%), Postives = 158/172 (91.86%), Query Frame = 2
Query:  227 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            MENLISLVNKIQRACTALGDHGE SALPTLWDSLPAIA            LES+VGKDFLPRGSGIVTRRPLVLQLHK++EGSREYAEFLH+PRKRFTDF AVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIV+DIE+MVRSYIEK
Sbjct:    1 MENLISLVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIDEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEK 172          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 8.545e-81
Identity = 151/172 (87.79%), Postives = 158/172 (91.86%), Query Frame = 2
Query:  227 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            MENLISLVNKIQRACTALGDHGE SALPTLWDSLPAIA            LES+VGKDFLPRGSGIVTRRPLVLQLHK+EEGSREYAEFLH+PRKRFTDF AVRKEIQDETDRETGRTKQIS+VPIHLSIYSPNVVNLTL+DLPGLTKVAVEGQPDSIV+DIE+MVRSYIEK
Sbjct:    1 MENLISLVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIEEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISTVPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEK 172          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 289.656 bits (740), Expect = 1.155e-77
Identity = 146/172 (84.88%), Postives = 157/172 (91.28%), Query Frame = 2
Query:  227 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            MENLISLVNKIQRACTALGDHG++SALPTLWDSLPAIA            LESIVGKDFLPRGSGIVTRRPLVLQL K+++G+REYAEFLH+PRK+FTDFAAVRKEIQDETDRETGR+K ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAV+GQ DSIV+DIENMVRSYIEK
Sbjct:    1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK 172          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.237e-71
Identity = 135/173 (78.03%), Postives = 156/173 (90.17%), Query Frame = 2
Query:  227 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGR-TKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            ME+LI+LVNKIQRACTALGDHGE S+LPTLWDSLPAIA            LES+VGKDFLPRG+GIVTRRPLVLQLH+++EG +EYAEF+H+P+K+FTDFAAVR+EI DETDRETGR +K IS+VPIHLSI+SPNVVNLTL+DLPGLTKVAV+GQP+SIVQDIENMVRS+IEK
Sbjct:    1 MESLIALVNKIQRACTALGDHGEGSSLPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGAGIVTRRPLVLQLHRIDEG-KEYAEFMHLPKKKFTDFAAVRQEISDETDRETGRSSKVISTVPIHLSIFSPNVVNLTLVDLPGLTKVAVDGQPESIVQDIENMVRSFIEK 172          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.565e-66
Identity = 125/172 (72.67%), Postives = 145/172 (84.30%), Query Frame = 2
Query:  227 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            M++LI L+NKIQRACT LGDHG      +LW++LP +A            LES+VG+DFLPRGSGIVTRRPLVLQLHK E+G+ EYAEFLH P+KRF DFAAVRKEI+DETDR TG++KQIS++PI LSIYSPNVVNLTLIDLPGLTKVAV+GQP+SIVQDIENMVRSY+EK
Sbjct:    4 MKSLIGLINKIQRACTVLGDHGGEGM--SLWEALPTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGTTEYAEFLHAPKKRFADFAAVRKEIEDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYVEK 173          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.033e-65
Identity = 122/175 (69.71%), Postives = 147/175 (84.00%), Query Frame = 2
Query:  227 MENLISLVNKIQRACTALGDHGE---ASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            ME+LI LVN+IQRACT LGD+G    ++A  +LW++LP +A            LESIVG+DFLPRGSGIVTRRPLVLQLHK ++G+ EYAEFLH+P+K+FTDFA VR+EIQDETDR TG+ KQIS VPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP++I +DIE+MVR+Y++K
Sbjct:    4 MESLIGLVNRIQRACTVLGDYGGGTGSNAFNSLWEALPTVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDDGTEEYAEFLHLPKKQFTDFALVRREIQDETDRITGKNKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPETIAEDIESMVRTYVDK 178          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 5.565e-64
Identity = 120/173 (69.36%), Postives = 147/173 (84.97%), Query Frame = 2
Query:  227 MENLISLVNKIQRACTALGDHG-EASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            ME+LI L+N IQRACT +GDHG +++AL +LW++LP++A            LESIVG+DFLPRGSGIVTRRPLVLQLHK E G+ + AEFLH+  K+FT+F+ VRKEI+DETDR TG+ KQISS+PIHLSI+SPNVVNLTLIDLPGLTKVAVEGQP++IV+DIE+MVRSY+EK
Sbjct:    1 MESLIVLINTIQRACTVVGDHGGDSNALSSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTENGTEDNAEFLHLTNKKFTNFSLVRKEIEDETDRITGKNKQISSIPIHLSIFSPNVVNLTLIDLPGLTKVAVEGQPETIVEDIESMVRSYVEK 173          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: DYN_DROME (Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.275e-41
Identity = 93/172 (54.07%), Postives = 116/172 (67.44%), Query Frame = 2
Query:  227 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            M++LI++VNK+Q A T+LG H +          LP IA            LE+ VGKDFLPRGSGIVTRRPL+LQL     G  EY EFLHI  K+F+ F  +RKEI+DETDR TG  K IS++PI+L +YSP+V+NLTLIDLPGLTKVA+  QP  I Q I+ M+  +I K
Sbjct:    1 MDSLITIVNKLQDAFTSLGVHMQLD--------LPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQLIN---GVTEYGEFLHIKGKKFSSFDEIRKEIEDETDRVTGSNKGISNIPINLRVYSPHVLNLTLIDLPGLTKVAIGDQPVDIEQQIKQMIFQFIRK 161          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: DYN3_RAT (Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.016e-38
Identity = 92/173 (53.18%), Postives = 110/173 (63.58%), Query Frame = 2
Query:  224 KMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            +ME LI LVN++Q A +ALG         +    LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL        EYAEFLH   K+FTDF  VR EI+ ETDR TG  K ISSVPI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I +M+  +I +
Sbjct:    5 EMEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITR 166          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: DYN1_RAT (Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.016e-38
Identity = 89/172 (51.74%), Postives = 111/172 (64.53%), Query Frame = 2
Query:  227 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            ME+LI LVN++Q A +A+G + +          LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL      + EYAEFLH   K+FTDF  VR EI+ ETDR TG  K IS VPI+L +YSP+V+NLTL+DLPG+TKV V  QP  I   I +M+  ++ K
Sbjct:    6 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK 166          
The following BLAST results are available for this feature:
BLAST of CK932713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
SDLCA_SOYBN6.543e-8188.37Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
SDL5A_SOYBN8.545e-8187.79Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
DRP1A_ARATH1.155e-7784.88Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
DRP1B_ARATH1.237e-7178.03Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DRP1C_ARATH1.565e-6672.67Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1E_ARATH5.033e-6569.71Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1D_ARATH5.565e-6469.36Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
DYN_DROME2.275e-4154.07Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=... [more]
DYN3_RAT4.016e-3853.18Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2[more]
DYN1_RAT4.016e-3851.74Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_E03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932713 ID=CK932713; Name=CK932713; organism=Citrus sinensis; type=EST; length=743bp
GGGGTCAACAGCCTCCCCACTTTCTTTTAAATTTCAAACTCTCTCTCTCT
CTCTCTCTCTCTCTCGTTTGTCCTACCGGCGAAGCAAAAACTAATCACAC
AGATCTCCTCTGAACGTCGCCGTTTCCAGCATCAGTTGTCAGATCCAGCT
GATCTGAATCTGACAGCTGAGATCATCTACGTTGCCGCCGCCGTCTCCCG
AGATATCTACTTAGCTGCGAGAGAAAATGGAGAACTTGATTTCTTTGGTT
AACAAAATACAAAGAGCTTGTACGGCTCTTGGCGACCACGGTGAAGCCAG
CGCATTGCCTACTCTTTGGGACTCTCTTCCTGCTATCGCCGTCGTCGGTG
GCCAGAGTTCTGGAAAGTCATCAGTGTTGGAGAGTATTGTTGGCAAGGAC
TTTTTACCGCGTGGATCTGGTATCGTTACACGGCGTCCTCTGGTGTTGCA
GCTTCATAAACTCGAAGAAGGCAGCAGAGAATATGCAGAGTTTCTTCACA
TTCCAAGGAAAAGATTTACCGATTTTGCTGCTGTGAGGAAAGAGATTCAA
GATGAGACTGATAGAGAGACTGGTCGTACCAAACAAATCTCGAGTGTACC
AATTCATCTCAGCATATATTCCCCTAATGTTGTCAACTTAACGCTGATTG
ATCTTCCTGGGCTCACAAAAGTAGCAGTTGAGGGTCAACCAGACAGTATT
GTGCAAGATATTGAGAATATGGTTCGCTCCTACATTGAGAAGC
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