CK932920

Overview
NameCK932920
Unique NameCK932920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13753 contig Csv1_Contig13753:3..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932920 vs. ExPASy Swiss-Prot
Match: YC54L_SYNY3 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803) GN=slr1780 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.675e-15
Identity = 48/102 (47.06%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  358 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPA--VALVSTNGPWITFMKLRLDRVLSDSYEAGS--LEEALAS 651
            YY+ +A+ KF+L EEE F+E+L ER R+YGE++KE DFW VI+P FL+       + + P   VA+VSTN  +I ++KLRL+ VL+  +EA S  + + LAS
Sbjct:   31 YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAPEKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPSDAIPDPLAS 131          
The following BLAST results are available for this feature:
BLAST of CK932920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YC54L_SYNY33.675e-1547.06Ycf54-like protein OS=Synechocystis sp. (strain PC... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004350_A06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932920 ID=CK932920; Name=CK932920; organism=Citrus sinensis; type=EST; length=876bp
GGGGAAGGTTTGTCTTTTGTTGGCTTCTGCCGCGTCCCCCAGGAATTGAG
AGAGGAAGTATATCTGTTCGCCATTTTAACTGCAGAAAAAGTAGGAGGAG
AATCTAAAATGTCGACATCAGCAAGCCTAAGCGTAACTGCTGGTATGCCG
ATTTCTACACAACATGGCTCTGCTGGCAGAGGCAGAGCTATAGTTCTATC
ACTTCCAAGCAATCATACATTGCCACAGGGACTGGGTCTTGTTTCTGCTC
ATTCAAACTTGAAGGGACGCAGAGGAAGCTTCAAGACGGCCGTGGCTTCT
GTTGACTCCAACCAGATTAGTTCCTCCTCTGTTCCTCCTGAAAAGGAAGC
AAACAAGTATTATTTTGTTGTTGCAAATGCAAAGTTCATGCTGGACGAAG
AAGAGCACTTCCAGGAGCTCTTGTTTGAGCGCCTACGGAACTATGGAGAG
CGTAGTAAAGAGCAGGACTTTTGGTTAGTTATTGAGCCCAAGTTCTTGGA
TAAGTTCCCTAACATTACTAAGAGATTGCGCAGACCTGCTGTCGCTCTGG
TTTCAACTAATGGTCCCTGGATTACGTTTATGAAACTGAGGCTGGACCGG
GTTTTATCAGATAGCTATGAAGCTGGCAGTCTAGAGGAAGCTTTAGCCTC
TAATCCTGCCACTCTCAAGTTTGAGAAGCAAGAGAAGTGGGTGGCACCTT
ATCCGAAATATGAATTTGGATGGTGGGAGGCCTTCTTGCCTACCGGATCA
AAAGGGTCAAAAGTATAGGGCAACTTTTCCTTTTTTATTTTTTTTTAATC
TTTTCTTCTTAACTCTTTGTAACAGAGGAATTTTCATCATGTATTAGTAA
GTAGCGATTGAGATTTGCATGCAATG
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