CK932927

Overview
NameCK932927
Unique NameCK932927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11749 contig Csv1_Contig11749:1096..1848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.798e-33
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 1
Query:   22 NYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQPL-PLASNAEN 327
            NY+EL+AELD+LFEF+GELMAPKK+W+IVYTD+E DMMLVGDDPWQEFC MVRKIFIYTKEEV KMN  + S + E+  + G+G DAK+ K    P  S+A N
Sbjct:  756 NYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNPGTLSCRSEEEAVVGEGSDAKDAKSASNPSLSSAGN 858          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.021e-28
Identity = 62/102 (60.78%), Postives = 77/102 (75.49%), Query Frame = 1
Query:   22 NYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQPLPLASNAEN 327
            NYDEL AELD++FEFDGEL++  KNW IVYTD+EGDMMLVGDDPW+EFC +VRKI+IYTKEEV KMNS S + + +DS  N  G         LP+ + ++N
Sbjct:  715 NYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDDSSENEKG--------HLPMPNKSDN 808          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27
Identity = 55/77 (71.43%), Postives = 66/77 (85.71%), Query Frame = 1
Query:   25 YDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDS 255
            YDELIAELDQ+F+F+GEL +  KNW++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV KMN  + +S+ EDS
Sbjct:  737 YDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGALNSRSEDS 813          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.926e-27
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 1
Query:   25 YDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNG--DGIDAKEVKQPLPLAS-NAEN 327
            Y+ELIAELD +F+F+GEL  PKK W++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN  + +S+ EDS  N    G   +E++  L  +S N+EN
Sbjct:  749 YEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.926e-27
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 1
Query:   25 YDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNG--DGIDAKEVKQPLPLAS-NAEN 327
            Y+ELIAELD +F+F+GEL  PKK W++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN  + +S+ EDS  N    G   +E++  L  +S N+EN
Sbjct:  749 YEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.280e-20
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVS 231
            L +YDELI EL+++FE +GEL +PK  W IV+TDDEGD MLVGDDPW EFC M +K+FIY  +EV KM S S
Sbjct:  532 LRSYDELIKELEKMFEIEGEL-SPKDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKS 602          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS---VSFSSKGED 252
            L +YDELI EL+++FE  G+L+A  K WI+V+TDDEGDMML GDDPW EFC M +KIFIY+ +EV KM +   +S S + E+
Sbjct:  510 LKSYDELIDELEEMFEIQGQLLARDK-WIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKMTTKLKISSSLENEE 590          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20
Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   25 YDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 222
            Y++L  +L+++F+  GEL+   K W +VYTDDE DMM+VGDDPW EFCGMVRKIFIYT EEV K++
Sbjct:  566 YEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLS 631          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.617e-19
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQ 297
            L+ YD+L  +L+++F+  GEL A  K W +VYTDDE DMMLVGDDPW EFC MV++I+IYT EE  ++   S        P+ GD I     KQ
Sbjct:  569 LHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKS------KLPIIGDAIKPNPNKQ 656          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQPLPLASNAEN 327
            L  Y+ELI ++++LF+  GEL + +  W IV+TDDEGDMMLVGDDPW EFC MV++IFI++KEEV KM           +P N   +  +EV+  L   S  +N
Sbjct:  544 LKGYNELIDDIEKLFDIKGELRS-RNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKM-----------TPGNQLRMLLREVETTLTTTSKTDN 635          
The following BLAST results are available for this feature:
BLAST of CK932927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ARFB_ARATH1.798e-3366.99Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFD_ORYSJ1.021e-2860.78Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFX_ORYSJ1.129e-2771.43Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSJ1.926e-2758.65Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI1.926e-2758.65Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFK_ARATH2.280e-2063.89Auxin response factor 11 OS=Arabidopsis thaliana G... [more]
ARFR_ARATH5.080e-2057.32Auxin response factor 18 OS=Arabidopsis thaliana G... [more]
ARFA_ARATH6.635e-2062.12Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFG_ORYSJ5.617e-1948.94Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFI_ARATH2.787e-1847.12Auxin response factor 9 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_H04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932927 ID=CK932927; Name=CK932927; organism=Citrus sinensis; type=EST; length=753bp
GGGGGATCTTTCTACCTTTACAACTATGACGAATTGATTGCCGAACTGGA
TCAGTTATTTGAATTTGATGGTGAATTAATGGCTCCCAAGAAAAATTGGA
TTATTGTATATACTGATGATGAGGGTGACATGATGCTTGTTGGAGATGAT
CCATGGCAGGAGTTTTGTGGTATGGTACGCAAAATTTTCATCTACACAAA
AGAGGAGGTCCTGAAGATGAACTCAGTGTCTTTTAGCTCGAAGGGTGAGG
ATAGTCCAATGAATGGGGACGGCATTGATGCAAAAGAAGTGAAACAGCCA
CTTCCTTTAGCATCCAATGCAGAGAATTTTTAGGTGTGGTTTTGATGGTT
CAAGGTTTTGTTGCAGCATCAGAAAGAAGATATTCAGGGCATTCTATTTT
GGATTATGAACTAATAGATGGATGTCAATCCTCCTCGTAGACGGCATGAC
TATCCAATTTTGGGCATGGTATATGGTGTCCGACTCATATAATACATTCA
ATATGTATACCCCCTATTTTGAGCATGGCAATTCTAGCTTTTGCTTTCCC
GAACGATCCCTTTTTGTACATAGTTGTTTACCCCTCTTTTCCAACCTCTT
AATGTAAGTAGCCTAAGTTTTATACATCTTCTGGTGCCTTCTTGGGAAAG
CCTACAGGCATATGTTTGTTTTGTTGGCTTTCTGTTCGCGGATCTCCATT
CACTAGGATTTTTAGCAGGTGTAGTAAGGGCTAATGACTTTGTAAGTCTT
TGC
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