CK932938

Overview
NameCK932938
Unique NameCK932938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1502 contig Csv1_Contig1502:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932938 vs. ExPASy Swiss-Prot
Match: SYP42_ARATH (Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.658e-40
Identity = 57/97 (58.76%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  190 MATGNRTGVYRKKRDXXXXXXXXXXXXXXXXXXX-VIEMVSGSLLRSNRSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEEIAVNTQRARVKMAEL 477
            MAT NRT VYRK RD                    VIEMVSGS  RSN SSYAPL++ DPGPSSSDAF++G+PPAWVDD+EEI  N Q+ R KM EL
Sbjct:    1 MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNEL 97          

HSP 2 Score: 80.8777 bits (198), Expect = 4.658e-40
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 2
Query:  476 LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMGPQEK 679
            + +FGD K     +E+LT+EITDLLR SEKRL  LS  G SE+SNLRKNVQ SLATDLQN SM  + K
Sbjct:  106 MPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRK 173          
BLAST of CK932938 vs. ExPASy Swiss-Prot
Match: SYP41_ARATH (Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.248e-38
Identity = 58/129 (44.96%), Postives = 71/129 (55.04%), Query Frame = 1
Query:   91 ISVKQNSLFTRNCKSKLRSINSCFRIQFPFSLSMATGNRTGVYRKKRDXXXXXXXXXXXXXXXXXXXVIEMVSGSLLRSNRSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEEIAVNTQRARVKMAEL 477
            ++ +  +L  R  ++ LRS+ +      P S S  TG R+G                          VIEM S SLL  NRS YAP+STEDPG SS  A +VGLPPAWVD +EEI+VN QRAR KMAEL
Sbjct:    1 MATRNRTLLFRKYRNSLRSVRA------PLSSSSLTGTRSG----------------------GVGPVIEMASTSLLNPNRS-YAPISTEDPGTSSKGAITVGLPPAWVDVSEEISVNIQRARTKMAEL 100          

HSP 2 Score: 87.0409 bits (214), Expect = 9.248e-38
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 2
Query:  476 LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMGPQEK 679
            + SFGDGK+DQH IE LT EIT LL+ SEK+L +LSA+G SEDSN+RKNVQ SLATDLQ  SM  ++K
Sbjct:  109 MPSFGDGKEDQHNIESLTQEITFLLKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLSMELRKK 176          
BLAST of CK932938 vs. ExPASy Swiss-Prot
Match: SYP43_ARATH (Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 8.282e-36
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 2
Query:  476 LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMGPQEK 679
            + SFGDGK+DQH IE LT E+T LL+ SEK+L +LSAAG SEDSN+RKNVQ SLATDLQN SM  ++K
Sbjct:  117 MPSFGDGKEDQHQIETLTQEVTFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKK 184          

HSP 2 Score: 79.337 bits (194), Expect = 8.282e-36
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  292 VIEMVSGSLLRSNRSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEEIAVNTQRARVKMAEL 477
            VIEM S SLL  NRS YAP+STEDPG SS    +VGLPP WVD +EEI+V  QRAR KMAEL
Sbjct:   48 VIEMASTSLLNPNRS-YAPVSTEDPGNSSRGTITVGLPPDWVDVSEEISVYIQRARTKMAEL 108          
The following BLAST results are available for this feature:
BLAST of CK932938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYP42_ARATH4.658e-4058.76Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 ... [more]
SYP41_ARATH9.248e-3844.96Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 ... [more]
SYP43_ARATH8.282e-3669.12Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004349_G06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932938 ID=CK932938; Name=CK932938; organism=Citrus sinensis; type=EST; length=705bp
GGGGAAAAACATTGACTTTTTTCACGACAAAGCTAAAGCTTAGAGTTAGT
TCATTCAACTTTCTTCTAAAACCCACAAATCTTAAATTCAATATCCGTTA
AACAAAATAGCTTGTTCACTCGAAATTGTAAATCCAAATTACGATCCATT
AATTCTTGCTTTCGAATTCAGTTTCCATTTTCGCTTTCCATGGCGACGGG
AAACCGGACGGGTGTTTACAGAAAGAAAAGAGATTCATTGAAGAGCGCGC
GTGCTCCTCTGTCTTCATCGGCTTCCGGTTCGGCAGGTCCGGTTATTGAA
ATGGTGAGCGGTTCGTTGCTTCGCTCTAATCGCTCTTCTTATGCTCCTCT
CAGTACTGAAGATCCCGGTCCTTCTAGCAGTGATGCATTTTCGGTAGGTC
TACCACCAGCATGGGTGGATGACGCTGAAGAAATAGCAGTTAATACACAA
CGTGCTCGGGTCAAAATGGCAGAACTTGTCATCTTTTGGAGATGGCAAAC
AAGATCAACACATGATCGAGATTCTTACATATGAGATTACAGATCTTTTA
AGGGGATCTGAGAAGAGATTAGATAAACTTTCTGCTGCTGGCTCTTCAGA
AGATTCAAATCTTAGAAAAAATGTACAGCATTCTCTTGCAACAGACCTTC
AGAACCATTCAATGGGACCTCAGGAAAAACCATTCAACGTATTTGAAGCA
TTTGC
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