CK932946

Overview
NameCK932946
Unique NameCK932946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932946 vs. ExPASy Swiss-Prot
Match: C3H14_ORYSJ (Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.823e-46
Identity = 98/191 (51.31%), Postives = 117/191 (61.26%), Query Frame = 3
Query:  216 GGRKRGRHDGASNGNGGFKKSKQEMENFPTGIGSESKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTXXXXXXXXXXXXXXXXXXDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVPSYEDPXXXXXXXXXXXXXXLEPPPQSLXXXXXXXXXXXXKISIDAKLAGAIRGK 788
            GGRKRG+ DGA NG GG  K  +E E+F TG+GS+SKPCTKFFSTSGCPFGEGCHFLH+ PGG++AV++M NLGG                   DG   P VK+RLCNKYN+AEGCK+GDKCHFAHGE ELG+P +     P                P P ++            KIS+DA LAG I G+
Sbjct:    4 GGRKRGKPDGA-NGAGG--KRARESESFQTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHFPGGYQAVAKMTNLGG--PAIAPPPGRMPMGNAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGERELGKPMLMDSSMPPPMGPRPTGHFAPPPMPSP-AMSTPASFGASATAKISVDASLAGGIIGR 188          
BLAST of CK932946 vs. ExPASy Swiss-Prot
Match: C3H31_ORYSJ (Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica GN=Os04g0665700 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.271e-41
Identity = 92/194 (47.42%), Postives = 110/194 (56.70%), Query Frame = 3
Query:  213 GGGRKRGRHDGASNGNGGFKKSKQEMENFPTGIGSESKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTXXXXXXXXXXXXXXXXXXDGSSPPAV--KSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVPSYEDPXXXXXXXXXXXXXXLEPPPQSLXXXXXXXXXXXXKISIDAKLAGAIRGK 788
            G  RKR R D A+ G  G K+S+ E E+F TG+ S+ KPCTKFFST GCPFGEGCHF H+VPGG++AV++ LNLG                     G+S PA   K+R+C KYN+AEGCKFGDKCHFAHGE ELG+P   S+E                  PP                KIS+DA LAG I GK
Sbjct:    5 GAARKRSRPDTANGGAAGGKRSR-ETESFQTGLSSKLKPCTKFFSTIGCPFGEGCHFSHFVPGGYQAVAKTLNLGN----PAVPAPARAPMDHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGERELGKPAYMSHESAMAPPMGGRYGGRPEPPPPAAMGPPAGNFGASATAKISVDASLAGGIIGK 193          
BLAST of CK932946 vs. ExPASy Swiss-Prot
Match: C3H44_ORYSJ (Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica GN=Os06g0618100 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.502e-35
Identity = 83/198 (41.92%), Postives = 104/198 (52.53%), Query Frame = 3
Query:  204 MELGGGRKRGRHDGASNGNGGFKKSKQEMENFPTGIGSESKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLGGTXXXXXXXXXXXXXXXXXXDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVPSYEDPXXXXXXXXXXXXXXLEPPPQ---SLXXXXXXXXXXXXKISIDAKLAGAIRGK 788
            ME GGG++      A  G  G  K  +  E+   G+GS+ KPCTKFFSTSGCPFG  CHFLH  PGG++A ++M + GGT                  +G    +VK+R+CNKYN+AEGCK+G KCHFAHGE ELG+P +     P               E PP     +            KIS+DA LAG I GK
Sbjct:    1 MEAGGGKR-----AAPEGTNGAAKRARASESSQVGVGSKLKPCTKFFSTSGCPFGSSCHFLHNFPGGYQAAAKMTSHGGT--AVAAPPGRMPLGPGAPNGPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGERELGKPMLLDNSMP-------HPMGSMPFEAPPMPGPDIVPPSTFGASATAKISVDASLAGGIIGK 184          
BLAST of CK932946 vs. ExPASy Swiss-Prot
Match: C3H36_ARATH (Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis thaliana GN=At3g12130 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.820e-27
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 3
Query:  222 RKRGRHD-GASNGNGG-FKKSKQEMENFPTGIGSESKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNLG 437
            RKRGR + G+ N NGG +KKSKQEME++ TG+GS+SKPCTKFFSTSGCPFGE CHFLHYVPGG+ AVSQM N+G
Sbjct:    4 RKRGRPEAGSFNSNGGGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFLHYVPGGYNAVSQMTNMG 77          
BLAST of CK932946 vs. ExPASy Swiss-Prot
Match: C3H52_ARATH (Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis thaliana GN=At5g06770 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.881e-26
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 3
Query:  222 RKRGRHDGAS--NGNGGFKKSKQEMENFPTGIGSESKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNL 434
            RKRGR + A+  N NGGFK+SKQEME+  TG+GS+SKPCTKFFSTSGCPFG+ CHFLHYVPGG+ A +QM NL
Sbjct:    4 RKRGRPEAAASHNSNGGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNL 76          
The following BLAST results are available for this feature:
BLAST of CK932946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H14_ORYSJ9.823e-4651.31Zinc finger CCCH domain-containing protein 14 OS=O... [more]
C3H31_ORYSJ4.271e-4147.42Zinc finger CCCH domain-containing protein 31 OS=O... [more]
C3H44_ORYSJ3.502e-3541.92Zinc finger CCCH domain-containing protein 44 OS=O... [more]
C3H36_ARATH7.820e-2775.68Zinc finger CCCH domain-containing protein 36 OS=A... [more]
C3H52_ARATH3.881e-2672.60Zinc finger CCCH domain-containing protein 52 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004349_F04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932946 ID=CK932946; Name=CK932946; organism=Citrus sinensis; type=EST; length=790bp
GGGGATTTTCACAAACTGTCCTCCCAATTTTTTTTTCTCCCTCTTCAATT
CGAGCCCTAGCTTTCTCTCACTAGGGTTCTTGCCCCCCAAAATTTTCTCG
CACTTTCTCTCACGCTTTCCCGCACTTTCTCGCCGCTTTTTTCCTTTTCG
CTCCGCTCGGTCGCGTGCTTCGACTTCGGATCCCGGCGGTTGTTTCTCTC
GTAATGGAGCTCGGTGGCGGCCGCAAGAGGGGAAGGCATGACGGTGCCTC
GAATGGCAATGGCGGCTTTAAGAAATCAAAGCAAGAAATGGAGAACTTTC
CAACTGGTATAGGAAGCGAATCGAAGCCATGCACAAAGTTTTTCAGTACT
TCTGGGTGCCCTTTCGGAGAGGGATGTCACTTCTTGCATTACGTTCCTGG
TGGTTTCAAAGCTGTCTCCCAGATGCTGAATCTTGGTGGCACCCCTGCTC
ATCCACCACCACCTCCTAGAAATTCAGGAGCCCCACCATCCTTTCCAGAT
GGCTCATCTCCCCCAGCTGTGAAATCTCGTTTGTGCAACAAATACAACTC
AGCTGAAGGTTGCAAGTTTGGCGATAAATGCCATTTTGCTCATGGTGAAT
GGGAGCTTGGCAGGCCAACTGTGCCATCCTATGAAGATCCTCGTGCCATG
GGAGGACCGATGCATGGCAGGATGGGTGGTCGGCTTGAGCCTCCTCCACA
ATCACTGGGAGCTGCAGCCAGTTTTGGGGCCTCGGCCACTGCTAAGATTA
GCATTGACGCTAAGCTTGCAGGAGCTATCAGGGGCAAAAT
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