CK932950

Overview
NameCK932950
Unique NameCK932950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932950_ssr80 microsatellite CK932950_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK932950_ssr70 microsatellite CK932950_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.815e-75
Identity = 144/183 (78.69%), Postives = 157/183 (85.79%), Query Frame = 1
Query:  169 TENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA---TSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            T+NG+QNG LE LC N        D L+WGV AE +KGSHL+EVKRMVA+YRKPVV LGGETLT+AQVA+IA   T    VELSESAR GVKASS+WVM+SM+KGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTE+ HTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    5 TKNGYQNGSLESLCVNQR------DPLSWGVAAEAMKGSHLDEVKRMVADYRKPVVKLGGETLTIAQVASIAGHDTGDVKVELSESARPGVKASSDWVMDSMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 181          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL1_PEA (Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 8.498e-75
Identity = 144/181 (79.56%), Postives = 154/181 (85.08%), Query Frame = 1
Query:  184 QNGGLEGLC----KNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS--TNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            +N G E  C    KN+N   +S D LNWGV AE +KGSHL+EVKRMV EYRKPVV LGGETLT++QVAAIA       VELSESAR GVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTESSHTLPH+ TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:   10 KNNGYESFCVTNAKNNNMKVNSADPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDHGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAI 190          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL1_SOYBN (Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PAL1 PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.314e-72
Identity = 143/181 (79.01%), Postives = 150/181 (82.87%), Query Frame = 1
Query:  175 NGHQNGGL-EGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA--TSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            NGHQNG       K +N      D LNWG  AE +KGSHL+EVKRMVAEYRKPVV LGGETLT+AQVAA+A       VELSESAREGVKASS WVM SMN GTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTESSHTLPH+ TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    5 NGHQNGSFCLSTAKGNN------DPLNWGAAAEAMKGSHLDEVKRMVAEYRKPVVRLGGETLTIAQVAAVAGHDHGVAVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAI 179          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL5_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL5 PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.948e-72
Identity = 139/184 (75.54%), Postives = 156/184 (84.78%), Query Frame = 1
Query:  172 ENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA-----TSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            +NGH NG    LCK    + +  D LNW + AE+L+GSHL+EVK+MV E+RKP+V LGGETLTVAQVA+IA     ++   VELSESAR GVKASS+WVM+SM KGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAG+FGNGTESSHTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    7 QNGHVNGEAMDLCKK---SINVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTVAQVASIANVDNKSNGVKVELSESARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 187          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PALY_TRISU (Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.794e-72
Identity = 136/165 (82.42%), Postives = 147/165 (89.09%), Query Frame = 1
Query:  217 DNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT-SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            +N   ++ D LNWGV AE +KGSHL+EVKRMV EYRKPVV LGGETLT++QVAAIA      VELSESAR GVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTES+HTLPH+ TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:   27 NNMKVNAADPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDGATVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAI 191          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.149e-71
Identity = 142/184 (77.17%), Postives = 151/184 (82.07%), Query Frame = 1
Query:  172 ENG-HQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS----TNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            ENG H NG   G C  D         LNWGV AE L GSHL+EVK+MV E+RKPVV LGGETLTV+QVA I+ +       VELSE+AR GVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    2 ENGTHVNGSANGFCIKD--------PLNWGVAAEALTGSHLDEVKKMVGEFRKPVVKLGGETLTVSQVAGISAAGDGNMVKVELSEAARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 177          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL2_PEA (Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.500e-71
Identity = 142/188 (75.53%), Postives = 154/188 (81.91%), Query Frame = 1
Query:  163 ATTENGHQNGGLEGLC----KNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS--TNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            A T+N   N G +  C    KN+N   S  D LNWGV AE +KGSHL+EVKRMV EYRKPVV LGGETLT++QVAAIA       VELSESAR GVKASS+WVMESMNKGTDSYGVTT  GATSHRRTK GGALQKELIRFLNAGIFGNG+ES+HTLPH+ TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    7 AITKN---NSGYDSFCLTNAKNNNIKVSDSDPLNWGVAAEAMKGSHLDEVKRMVDEYRKPVVRLGGETLTISQVAAIAAHDHGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTVHGATSHRRTKQGGALQKELIRFLNAGIFGNGSESTHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAI 191          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PALY_CAMSI (Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.959e-71
Identity = 143/188 (76.06%), Postives = 151/188 (80.32%), Query Frame = 1
Query:  151 MERGATTENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            M+      NG  +GG  G C  D         LNWGV AE +KGSHLEEVK MV E+RKPVV LGGETLT++QVAAIA   S   VELSESAREGVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTES HTLP S TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    1 MDSTTAIGNGVGSGGSPGFCLKD--------PLNWGVAAEAMKGSHLEEVKGMVEEFRKPVVRLGGETLTISQVAAIAVRGSEVAVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKEGGALQKELIRFLNAGIFGNGTESCHTLPQSATRAAMLVRINTLLQGYSGIRFEILEAI 180          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL1_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.559e-71
Identity = 140/184 (76.09%), Postives = 155/184 (84.24%), Query Frame = 1
Query:  175 NGHQNGGLE-GLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT-----SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            NGH NGG    LCK       S D LNW + AE+L+GSHL+EVK+MV+E+RKP+V LGGE+LTVAQVAAIA      +   VELSE AR GVKASS+WVM+SMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAG+FGNGTE+SHTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    4 NGHVNGGENFELCKK------SADPLNWEMAAESLRGSHLDEVKKMVSEFRKPMVKLGGESLTVAQVAAIAVRDKSANGVKVELSEEARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTETSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 181          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PALY_MEDSA (Phenylalanine ammonia-lyase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.166e-70
Identity = 137/183 (74.86%), Postives = 151/183 (82.51%), Query Frame = 1
Query:  166 TTENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS--TNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            T  N +++  L     N+N   +  D LNWGV AE +KGSHL+EVKRMVAEYRKPVV LGGETLT++QVAAIA       V+LSESAR+GVKASS WVMESMNKGTDSYGVTTGFGATSH RTK GGALQKELIRFLNAGIFGNGTES+HTLP + TRAAMLVR+NTLLQGYSGI FEILEAI
Sbjct:    9 TKNNANESFCLIHAKNNNNMKVNEADPLNWGVAAEAMKGSHLDEVKRMVAEYRKPVVRLGGETLTISQVAAIAAHDHGVQVDLSESARDGVKASSEWVMESMNKGTDSYGVTTGFGATSHSRTKQGGALQKELIRFLNAGIFGNGTESNHTLPKTATRAAMLVRINTLLQGYSGIDFEILEAI 191          
The following BLAST results are available for this feature:
BLAST of CK932950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PALY_POPTR3.815e-7578.69Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PAL1_PEA8.498e-7579.56Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=... [more]
PAL1_SOYBN2.314e-7279.01Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PA... [more]
PAL5_SOLLC3.948e-7275.54Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PALY_TRISU8.794e-7282.42Phenylalanine ammonia-lyase OS=Trifolium subterran... [more]
PALY_HELAN1.149e-7177.17Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]
PAL2_PEA1.500e-7175.53Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=... [more]
PALY_CAMSI1.959e-7176.06Phenylalanine ammonia-lyase OS=Camellia sinensis G... [more]
PAL1_TOBAC2.559e-7176.09Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PALY_MEDSA2.166e-7074.86Phenylalanine ammonia-lyase OS=Medicago sativa PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_E01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932950 ID=CK932950; Name=CK932950; organism=Citrus sinensis; type=EST; length=709bp
GCGGGGAGGAAATCCATTATTGTTATAGACTNNNGAATTTCCTTTAGCTC
ANNNNTTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCA
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