CK932959

Overview
NameCK932959
Unique NameCK932959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932959 vs. ExPASy Swiss-Prot
Match: RBSK_BACSU (Ribokinase OS=Bacillus subtilis GN=rbsK PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 55/137 (40.15%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  302 LVVVGSANFDIYVEIDRLPKVGETVSAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDASGKLITDALSGCGVRLDYVNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGANMSCWPEKFGDEDLEVVKKAGIVLL 712
            + V+GS + D+ V  D+ PK GETV   + QT+ GGKGANQA   A+L    + VG+VG+D  G  I + L   GVR DY+  V      T H V+   ++G NSI++V GAN    P  +    LE ++K  +VL+
Sbjct:    4 ICVIGSCSMDLVVTSDKRPKAGETVLGTSFQTVPGGKGANQAVAAARLGAQVFMVGKVGDDHYGTAILNNLKANGVRTDYMEPVTHTESGTAHIVL---AEGDNSIVVVKGANDDITP-AYALNALEQIEKVDMVLI 136          
BLAST of CK932959 vs. ExPASy Swiss-Prot
Match: RBSK_YEAST (Probable ribokinase OS=Saccharomyces cerevisiae GN=RBK1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  302 LVVVGSANFDIYVEIDRLPKVGETVSAKTSQTLAGGKGANQAACGAKLSHPT-----YFVGQVGEDASGKLITDALSGCGVRLDYVNVVKDGGVPTGHAVVMLQ--SDGQNSIIIVGGAN 640
            + V+GS N+D+    DRLP  GET  A   +T AGGKG NQAA   KL +P+       +G VG D  GK + D LS CGV + +V   +  G+ TG A ++++  + GQN I+IV GAN
Sbjct:    3 ITVIGSLNYDLDTFTDRLPNAGETFRANHFETHAGGKGLNQAAAIGKLKNPSSRYSVRMIGNVGNDTFGKQLKDTLSDCGVDITHVGTYE--GINTGTATILIEEKAGGQNRILIVEGAN 120          
BLAST of CK932959 vs. ExPASy Swiss-Prot
Match: RBSK_BACHD (Ribokinase OS=Bacillus halodurans GN=rbsK PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.769e-15
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  296 PPLVVVGSANFDIYVEIDRLPKVGETVSAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDASGKLITDALSGCGVRLDYVNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGANMSCWPE 658
            P + VVGS N D+    D +P  GETV  K  +T+ GGKGANQA   A+L      +G+VG+D  G ++T+ L+  G+  D V  V D    +G A ++L SD  N II+  GAN    P+
Sbjct:    4 PNITVVGSINMDMVTITDVVPVQGETVLGKDFRTVPGGKGANQAVAAARLGANVRMIGRVGDDPFGHVLTENLAKEGIITDSVKPVTD--CTSGVATILL-SDRDNRIIVTKGANEHVTPD 121          
BLAST of CK932959 vs. ExPASy Swiss-Prot
Match: RBSK_DICDI (Probable ribokinase OS=Dictyostelium discoideum GN=rbsk PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 38/113 (33.63%), Postives = 68/113 (60.18%), Query Frame = 2
Query:  302 LVVVGSANFDIYVEIDRLPKVGETVSAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDASGKLITDALSGCGVRLDYVNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGAN 640
            + VVG++N+D ++ +D++P+VGET+     +   GGK ANQA   + L      + ++G+D SG           +  ++V+VV +  VP+G A +++  +G N+III+GG+N
Sbjct:    5 ITVVGASNWDTFIYVDKMPRVGETIKGTDLKVSYGGKAANQAVQASLLGSNCTLITKLGDDPSGVNTLKNFKDKNINCEFVSVVSN--VPSGCATIIVDKNGDNNIIIIGGSN 115          
BLAST of CK932959 vs. ExPASy Swiss-Prot
Match: RBSK_HAEIN (Ribokinase OS=Haemophilus influenzae GN=rbsK PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 39/113 (34.51%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  302 LVVVGSANFDIYVEIDRLPKVGETVSAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDASGKLITDALSGCGVRLDYVNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGAN 640
            L V+GS N D  + +    K GET++ +  Q   GGKGANQA   A+L     F+  +G D+ GK + +A +  G+   ++N V      TG A + +    +NSI++  GAN
Sbjct:    5 LTVLGSINADHVISVPYFTKPGETLTGQNYQIAYGGKGANQAVAAARLGAKVAFISCIGSDSIGKTMKNAFAQEGIDTTHINTVSQ--EMTGMAFIQVAKSSENSIVLASGAN 115          
BLAST of CK932959 vs. ExPASy Swiss-Prot
Match: RBSK_HUMAN (Ribokinase OS=Homo sapiens GN=RBKS PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 43/114 (37.72%), Postives = 61/114 (53.51%), Query Frame = 2
Query:  302 LVVVGSANFDIYVEIDRLPKVGETVSAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDASGKLITDALSGCGVRLDYVNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGANM 643
            +VVVGS   D+     RLPK GET+         GGKGANQ    A+L   T  V +VG+D+ G    + L    +  ++    KD    TG A +++ ++GQN I+IV GAN+
Sbjct:   18 VVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAA--TGTASIIVNNEGQNIIVIVAGANL 129          
BLAST of CK932959 vs. ExPASy Swiss-Prot
Match: RBSK_ECOLI (Ribokinase OS=Escherichia coli (strain K12) GN=rbsK PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  302 LVVVGSANFDIYVEIDRLPKVGETVSAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDASGKLITDALSGCGVRLDYVNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGANMSCWP 655
            LVV+GS N D  + +   P  GETV+    Q   GGKGANQA    +      F+   G+D+ G+ +   L+   + +  V+V+K  G  TG A++ +  +G+N I I  GAN +  P
Sbjct:    7 LVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIK--GESTGVALIFVNGEGENVIGIHAGANAALSP 122          
BLAST of CK932959 vs. ExPASy Swiss-Prot
Match: RBSK_ECO57 (Ribokinase OS=Escherichia coli O157:H7 GN=rbsK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  302 LVVVGSANFDIYVEIDRLPKVGETVSAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDASGKLITDALSGCGVRLDYVNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGANMSCWP 655
            LVV+GS N D  + +   P  GETV+    Q   GGKGANQA    +      F+   G+D+ G+ +   L+   + +  V+V+K  G  TG A++ +  +G+N I I  GAN +  P
Sbjct:    7 LVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIK--GESTGVALIFVNGEGENVIGIHAGANAALSP 122          
BLAST of CK932959 vs. ExPASy Swiss-Prot
Match: RBSK_LACLA (Ribokinase OS=Lactococcus lactis subsp. lactis GN=rbsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 49/136 (36.03%), Postives = 69/136 (50.74%), Query Frame = 2
Query:  308 VVGSANFDIYVEIDRLPKVGETVSAKTSQTLAGGKGANQAACGAKLS-HPTYFVGQVGEDASGKLITDALSGCGVRLDYVNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGANMSCWPEKFGDEDLEVVKKAGIVLL 712
            V+GS + D+    +R+P  GETV  +    + GGKGANQA   A+LS +    +G VG+DA G+ I        V  + V  V      TG A + L  D  N III+ GAN    P    D   E +K++ +V+L
Sbjct:    6 VIGSISMDLVTRTNRVPNAGETVFGEDFAMVPGGKGANQAVAFARLSPNEVSMIGAVGKDAFGESILQNFKENAVLFENVGTVPQ---TTGIAQITLYDD-DNRIIIIPGANNEVLPSYLADL-WEKIKESQLVIL 136          
BLAST of CK932959 vs. ExPASy Swiss-Prot
Match: RBSK_MOUSE (Ribokinase OS=Mus musculus GN=Rbks PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 48/136 (35.29%), Postives = 67/136 (49.26%), Query Frame = 2
Query:  302 LVVVGSANFDIYVEIDRLPKVGETVSAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDASGKLITDALSGCGVRLDYVNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGANMSCWPEKFGDEDLEVVKKAGIVL 709
            +VVVGS   D+     RLPK GET+         GGKGANQ    A+L      V +VG D+ G    + L    +  ++    +D    TG A +++ ++GQN I+IV GAN+         EDL   KKA  V+
Sbjct:   19 VVVVGSCMTDLVSLTSRLPKTGETIHGHEFFIGFGGKGANQCVQAARLGAKAAIVCKVGNDSFGNDYIENLKQNHISTEFTYQTRDAA--TGTASIIVNNEGQNIIVIVAGANLF-----LNSEDL---KKAASVI 144          
The following BLAST results are available for this feature:
BLAST of CK932959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RBSK_BACSU2.956e-1940.15Ribokinase OS=Bacillus subtilis GN=rbsK PE=3 SV=2[more]
RBSK_YEAST4.269e-1843.33Probable ribokinase OS=Saccharomyces cerevisiae GN... [more]
RBSK_BACHD5.769e-1540.50Ribokinase OS=Bacillus halodurans GN=rbsK PE=3 SV=... [more]
RBSK_DICDI2.192e-1433.63Probable ribokinase OS=Dictyostelium discoideum GN... [more]
RBSK_HAEIN1.203e-1234.51Ribokinase OS=Haemophilus influenzae GN=rbsK PE=3 ... [more]
RBSK_HUMAN7.798e-1237.72Ribokinase OS=Homo sapiens GN=RBKS PE=1 SV=1[more]
RBSK_ECOLI1.330e-1134.75Ribokinase OS=Escherichia coli (strain K12) GN=rbs... [more]
RBSK_ECO571.330e-1134.75Ribokinase OS=Escherichia coli O157:H7 GN=rbsK PE=... [more]
RBSK_LACLA2.963e-1136.03Ribokinase OS=Lactococcus lactis subsp. lactis GN=... [more]
RBSK_MOUSE6.601e-1135.29Ribokinase OS=Mus musculus GN=Rbks PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004349_D02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932959 ID=CK932959; Name=CK932959; organism=Citrus sinensis; type=EST; length=712bp
GCGGGGAAAACGANNACCTCTCTCCTTGTCTCATNNNAAAGTTTGAAATN
NNNCTGCTCTGCAAAAGCTAATAACAATAATAAAAATAATAATCATGAAA
GGAATATCGCTTTCACCATCAAACAATTGTCAACTCAAATTCCAAAACAT
CCTCGCAAAACAACTCAACAAACCGATCAACACAACCCCATTTCACTTCA
CCACCACAAATCGCCAATTCCCCACACATGTTATTAAATGCCAATGTCAG
CGAAGAGACCAAAACCTAGTACCCAAAAACCCCATTAACACGCCACCACC
ACTGGTAGTAGTTGGCTCAGCCAATTTTGATATCTATGTGGAAATCGACA
GGCTTCCTAAAGTAGGCGAGACAGTTTCAGCCAAGACTAGCCAGACTCTT
GCTGGGGGCAAGGGTGCCAATCAGGCTGCTTGTGGGGCGAAACTCTCCCA
TCCAACTTACTTTGTGGGTCAAGTGGGTGAAGATGCAAGTGGGAAATTGA
TCACTGATGCTTTGAGTGGATGTGGGGTGAGATTGGATTATGTGAATGTT
GTTAAAGATGGTGGTGTCCCTACTGGACACGCTGTGGTGATGCTGCAGTC
TGATGGGCAGAACTCTATTATCATTGTTGGTGGGGCTAATATGAGTTGTT
GGCCTGAGAAGTTTGGTGATGAGGATTTGGAGGTTGTGAAGAAGGCTGGG
ATTGTTTTGCTT
back to top