CK932990

Overview
NameCK932990
Unique NameCK932990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932990_ssr185 microsatellite CK932990_ssr185:185..194. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK932990 vs. ExPASy Swiss-Prot
Match: RISA_ACTPL (Riboflavin synthase alpha chain OS=Actinobacillus pleuropneumoniae GN=ribE PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.038e-37
Identity = 81/156 (51.92%), Postives = 104/156 (66.67%), Query Frame = 3
Query:  264 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDE 731
            +FTGI+EE+G+I Q+    +   V+ I A  VL+ VHLGD+IAVNG CLTVT F +    FT  +  ETL++TSL EL+  S VNLERA+    R GGH V GH+DGTG I  + P  +S W ++KT   L++YI+ KG I IDG SLTVVD  DE
Sbjct:    1 MFTGIIEEVGKIAQIHKQGEFA-VVTINATKVLQDVHLGDTIAVNGVCLTVTSFSSN--QFTADVMSETLKRTSLGELKSNSPVNLERAMAANGRFGGHIVSGHIDGTGEIAEITPAHNSTWYRIKTSPKLMRYIIEKGSITIDGISLTVVDTDDE 153          
BLAST of CK932990 vs. ExPASy Swiss-Prot
Match: RISA_SCHPO (Riboflavin synthase alpha chain OS=Schizosaccharomyces pombe GN=rib5 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.562e-36
Identity = 80/156 (51.28%), Postives = 108/156 (69.23%), Query Frame = 3
Query:  264 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVK-TDKSLLKYIVPKGFIAIDGTSLTVVDVFD 728
            +FTG+VE +G ++ +  + D GF MKI A  +L+  H GDSIAVNGTCLTVT+F      FTVG++PE+LR T+L + + G  VNLERAV  ++RMGGHFVQGHVD    IV  + + +++    +  D  +LKYIV KG+IA+DGTSLT+  V D
Sbjct:    1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDRY--HFTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDD 154          
BLAST of CK932990 vs. ExPASy Swiss-Prot
Match: RISA_PICGU (Riboflavin synthase alpha chain OS=Pichia guilliermondii GN=RIB5 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.109e-34
Identity = 87/168 (51.79%), Postives = 105/168 (62.50%), Query Frame = 3
Query:  264 LFTGIVEEMGEIEQLG-----ASNDGGFVMKIR-AKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVK-TDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFN 746
            +FTG+VE +G + Q+      AS   G  M I     +LE V LGDSI  NG CLTVTEF      F VG+SPETLR++ L EL+PGS VNLERAV+   RMGGH VQGHVD    IV+   + +++    K  D    KYIV KGFIAIDGTSLTV DV  E+  F+
Sbjct:    1 MFTGLVEHIGTVLQVTEKDTTASGGDGVSMVIGDCSKILEDVQLGDSICTNGVCLTVTEFDMARSQFKVGISPETLRRSDLGELKPGSKVNLERAVKADVRMGGHVVQGHVDTIATIVNRRGDGNAINFTFKLRDSQYGKYIVEKGFIAIDGTSLTVTDVDHEQSEFS 168          
BLAST of CK932990 vs. ExPASy Swiss-Prot
Match: RISA_BACSU (Riboflavin synthase alpha chain OS=Bacillus subtilis GN=ribE PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.045e-33
Identity = 75/156 (48.08%), Postives = 101/156 (64.74%), Query Frame = 3
Query:  264 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDE 731
            +FTGI+EE G IE +  +      + I+   +LE VHLGDSIAVNG CLTVT+F      FTV + PET++ TSL +L  GS VNLERA+    R GGHFV GHVDGT  I  +E + ++++  +K D SL K +V KG I +DG SLT+  + ++
Sbjct:    1 MFTGIIEETGTIESMKKAGHA-MALTIKCSKILEDVHLGDSIAVNGICLTVTDFTKN--QFTVDVMPETVKATSLNDLTKGSKVNLERAMAANGRFGGHFVSGHVDGTAEITRIEEKSNAVYYDLKMDPSLTKTLVLKGSITVDGVSLTIFGLTED 153          
BLAST of CK932990 vs. ExPASy Swiss-Prot
Match: RISA_YEAST (Riboflavin synthase alpha chain OS=Saccharomyces cerevisiae GN=RIB5 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.083e-30
Identity = 78/160 (48.75%), Postives = 102/160 (63.75%), Query Frame = 3
Query:  264 LFTGIVEEMGEIEQLGASND---GGFVMKI---RAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVK-TDKSLLKYIVPKGFIAIDGTSLTVVDV 722
            +FTGIVE MG + +    +D   GG  + I    A ++L   H+GDSIAVNG CLTVTEF    + F VG+SPET++++++     G+ VNLERAV    R GGH+VQGHVD    IVS  PE +S+    +  D+   KYIV KGFI IDGTSLT++ V
Sbjct:    1 MFTGIVECMGTVLENNPYDDSESGGQGVSITIGNAGSILTDCHVGDSIAVNGVCLTVTEFNN--DSFKVGISPETIKRSNVASWIQGTQVNLERAVSQDVRFGGHYVQGHVDTVANIVSRRPEGNSIIFGFQLRDQEYFKYIVEKGFICIDGTSLTIIKV 158          
BLAST of CK932990 vs. ExPASy Swiss-Prot
Match: RISA_BACAM (Riboflavin synthase alpha chain OS=Bacillus amyloliquefaciens GN=ribE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 73/156 (46.79%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  264 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDE 731
            +FTGIVEE G I+ +  +      + I A  V   V LGDSIAVNG CLTVT F      FTV + PET++ TSL  L  GS VNLERA+    R GGHFV GHVDGT  I  +E + ++++  +K    L K +V KG I +DG S T+  + DE
Sbjct:    1 MFTGIVEETGTIQAIKKTGLS-MALTIAASKVTSDVRLGDSIAVNGICLTVTGFSDN--QFTVDVMPETVKATSLNGLSKGSKVNLERAMSANGRFGGHFVSGHVDGTAEITRIEKKSNAVYYDLKLSPELTKTLVLKGSITVDGVSSTIFGLSDE 153          
BLAST of CK932990 vs. ExPASy Swiss-Prot
Match: RISA_MYCTU (Riboflavin synthase alpha chain OS=Mycobacterium tuberculosis GN=ribE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.563e-27
Identity = 74/152 (48.68%), Postives = 92/152 (60.53%), Query Frame = 3
Query:  264 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED--FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTV 713
            +FTGIVEE GE+    A  D    + IR   V      GDSIAVNG CLTV +    L D  FT  +  ETL +++L EL PGS VNLERA    SR+GGH VQGHVD TG IV+  P E    ++++   S+ +Y+V KG I +DG SLTV
Sbjct:    1 MFTGIVEERGEVTGREALVDAAR-LTIRGPMVTADAGHGDSIAVNGVCLTVVDV---LPDGQFTADVMAETLNRSNLGELRPGSRVNLERAAALGSRLGGHIVQGHVDATGEIVARCPSEHWEVVRIEMPASVARYVVEKGSITVDGISLTV 148          
BLAST of CK932990 vs. ExPASy Swiss-Prot
Match: RISA_MYCBO (Riboflavin synthase alpha chain OS=Mycobacterium bovis GN=ribE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.563e-27
Identity = 74/152 (48.68%), Postives = 92/152 (60.53%), Query Frame = 3
Query:  264 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED--FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTV 713
            +FTGIVEE GE+    A  D    + IR   V      GDSIAVNG CLTV +    L D  FT  +  ETL +++L EL PGS VNLERA    SR+GGH VQGHVD TG IV+  P E    ++++   S+ +Y+V KG I +DG SLTV
Sbjct:    1 MFTGIVEERGEVTGREALVDAAR-LTIRGPMVTADAGHGDSIAVNGVCLTVVDV---LPDGQFTADVMAETLNRSNLGELRPGSRVNLERAAALGSRLGGHIVQGHVDATGEIVARCPSEHWEVVRIEMPASVARYVVEKGSITVDGISLTV 148          
BLAST of CK932990 vs. ExPASy Swiss-Prot
Match: RISA_AQUAE (Riboflavin synthase alpha chain OS=Aquifex aeolicus GN=ribE PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26
Identity = 72/165 (43.64%), Postives = 104/165 (63.03%), Query Frame = 3
Query:  264 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSME--PEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFM 752
            +FTG+VE++G+++ L  S+ G    K+  +T LE V LGDS++VNG CLTV +  +    F V  SPETL++T+L +L+ G  VNLERA++   R+GGH VQGHVD T  + S     E   L I++  + S+  Y+V KG IA+DG SLTV  V + +   N +
Sbjct:    1 MFTGLVEDLGKVKNLTLSSKGA---KLSVETKLEDVKLGDSVSVNGACLTVVDIKSSTLTFDV--SPETLKRTNLGKLKTGDYVNLERALRVGERLGGHIVQGHVDFTAPVKSFNFLGEHYELVIEIPEEWSI--YVVEKGSIALDGISLTVNYVKENKVFINII 158          
BLAST of CK932990 vs. ExPASy Swiss-Prot
Match: RISA_PHOLE (Riboflavin synthase alpha chain OS=Photobacterium leiognathi GN=ribE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.418e-22
Identity = 59/154 (38.31%), Postives = 88/154 (57.14%), Query Frame = 3
Query:  264 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVF 725
            +FTGI+E +G I  +   N+   ++       +  V++GDSIA NG CLTV++       +T  LS ET ++T+      G  VNLE+A+ PT+R+GGH V GHVDG G ++  +    ++ I V     L KY+  KG + IDG SLT+  V+
Sbjct:    1 MFTGIIESIGNIGAIIRHNEDLSIVVNTNNLDISDVNIGDSIATNGVCLTVSKLLPS--GYTADLSLETYKRTAFHSYRIGQEVNLEKAMLPTTRLGGHLVSGHVDGVGEVIEFKRNGRAINIWVAVPVQLKKYLSEKGSVTIDGISLTINAVY 152          
The following BLAST results are available for this feature:
BLAST of CK932990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RISA_ACTPL2.038e-3751.92Riboflavin synthase alpha chain OS=Actinobacillus ... [more]
RISA_SCHPO8.562e-3651.28Riboflavin synthase alpha chain OS=Schizosaccharom... [more]
RISA_PICGU2.109e-3451.79Riboflavin synthase alpha chain OS=Pichia guillier... [more]
RISA_BACSU3.045e-3348.08Riboflavin synthase alpha chain OS=Bacillus subtil... [more]
RISA_YEAST1.083e-3048.75Riboflavin synthase alpha chain OS=Saccharomyces c... [more]
RISA_BACAM3.484e-2946.79Riboflavin synthase alpha chain OS=Bacillus amylol... [more]
RISA_MYCTU5.563e-2748.68Riboflavin synthase alpha chain OS=Mycobacterium t... [more]
RISA_MYCBO5.563e-2748.68Riboflavin synthase alpha chain OS=Mycobacterium b... [more]
RISA_AQUAE1.239e-2643.64Riboflavin synthase alpha chain OS=Aquifex aeolicu... [more]
RISA_PHOLE1.418e-2238.31Riboflavin synthase alpha chain OS=Photobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_B02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932990 ID=CK932990; Name=CK932990; organism=Citrus sinensis; type=EST; length=754bp
GGGGACGGTTTAGGGGTTTTGTAAGAAATATCAAACAACGAAAAAAAAGG
GCTGCTTCAGCTAAATTCTCTCTCACACNNTCCTTCAAAATCCCAGAATC
CTATCCCCCTAAAACCCTAGTATCCAATTTCCTAACGATCCCTTCAAAAT
CGTACCTCAAATTCAACCCCTATTTCAAACCCAGCTCTCTCTCTCACCTC
ACCACCATACCCAAACCCAAATTCAAATCTGGAACCCAGTTTCACAACCG
GATGATCCGCTGTCTTTTCACCGGGATCGTCGAAGAAATGGGGGAAATCG
AGCAGCTGGGTGCTTCCAACGACGGCGGATTCGTCATGAAAATACGTGCG
AAAACTGTTCTTGAAGGCGTCCACTTAGGCGACAGCATTGCTGTTAATGG
AACGTGTCTCACTGTTACGGAATTTGGTACCCAATTGGAAGATTTTACCG
TTGGATTATCGCCTGAGACTTTGAGAAAGACTTCTTTGATTGAATTGGAA
CCGGGTTCGCTGGTGAATTTGGAGAGGGCAGTACAGCCGACGAGTCGTAT
GGGCGGGCATTTTGTGCAGGGGCATGTGGATGGCACGGGGGTGATTGTGT
CAATGGAGCCTGAAGAGGATTCTTTGTGGATTAAAGTGAAAACAGATAAA
AGTTTATTGAAGTATATAGTCCCTAAAGGGTTTATAGCCATCGATGGTAC
TAGTTTAACGGTGGTGGATGTGTTTGATGAGGAGGAGTGTTTTAACTTCA
TGCT
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