CK932997

Overview
NameCK932997
Unique NameCK932997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932997_ssr554 microsatellite CK932997_ssr554:554..565. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9760 contig Csv1_Contig9760:6..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932997 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.025e-25
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 1
Query:  244 SHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 453
            +HPPYFQMI EAL AL +K GSSPYA+AKYME+KHKDELPANFRKIL +QLK+ AAKG LIKI+ASYKLS
Sbjct:   48 THPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLS 117          
BLAST of CK932997 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.659e-17
Identity = 40/70 (57.14%), Postives = 57/70 (81.43%), Query Frame = 1
Query:  244 SHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 453
            +H PY +M++EA+T+L++++GSS YAIAK++E+KHK +LP NFRK+L VQLK   A G L K++ SYKLS
Sbjct:   49 THLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLS 118          
BLAST of CK932997 vs. ExPASy Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.637e-16
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  244 SHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 453
            +HP Y +M++EA+ AL+++SGSS  AI K++E+KHK  LPANFRKIL  Q+K   A G L K++ SYKL+
Sbjct:   54 AHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKLA 123          
BLAST of CK932997 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 36/69 (52.17%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  244 SHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 450
            +HPPYF+MI +A+  L++++GSS +AI K++EEK K  LP+NF+K+L  QLK F A   L+K++ SYKL
Sbjct:   55 THPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122          
BLAST of CK932997 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.368e-14
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  244 SHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 453
            SHP Y +MI +A+ +L++K+GSS YAIAK++EEK K +LPANF+K+L   LK   A G LIK++ S+KLS
Sbjct:   61 SHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKLIKVKGSFKLS 129          
BLAST of CK932997 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.368e-14
Identity = 35/69 (50.72%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  244 SHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 450
            SHP +F+MI++A++ L++++GSS YAI K++E+KHK +LP+NFRK+L   LK   A G L+K++ S+KL
Sbjct:   50 SHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKL 117          
BLAST of CK932997 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.005e-13
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  244 SHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 450
            SHP Y +MI +A+  L++++GSS YAI K++EEK K ELP  FRK+L + LK   A G L+K++AS+KL
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128          
BLAST of CK932997 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.833e-13
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  244 SHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 450
            SHP Y +MI +A+  L++++GSS YAI K++EEKHK  LP  FRK+L V LK   A   L+K++AS+K+
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128          
The following BLAST results are available for this feature:
BLAST of CK932997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
H1_SOLPN1.025e-2580.00Histone H1 OS=Solanum pennellii PE=2 SV=1[more]
H1_MAIZE6.659e-1757.14Histone H1 OS=Zea mays PE=2 SV=2[more]
H1_WHEAT5.637e-1654.29Histone H1 OS=Triticum aestivum PE=2 SV=2[more]
H1_SOLLC1.813e-1452.17Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
H1_PEA2.368e-1455.71Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H1_EUPES2.368e-1450.72Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
H11_ARATH2.005e-1352.17Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 ... [more]
H12_ARATH5.833e-1350.72Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004349_A01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932997 ID=CK932997; Name=CK932997; organism=Citrus sinensis; type=EST; length=875bp
GGGGAATAAACAATCAAGGCTGTAATTCAAGGCTTTAGTTTTCTTCTAGT
AATTCTGCGAGATCGTTTTGAGCCAATTCGTTAGTTGCGAAAGTAGATGG
CCACAGAAGGTGAAGCTGTGACGGAGCAGCAGCCGGCTGCGGAGGAGCCG
GAAGAGGTCGTCACTGAGAAGAAGGCCAAGGCTGCTAAGGAGAAGAAGCC
CAAGGCTCCTAAAGAGAAGAAGCCAAAGCAGTCCAAAACCCCCTCTCATC
CTCCTTATTTTCAGATGATAACGGAGGCACTGACGGCGCTGCAAGATAAG
AGCGGTTCAAGCCCATACGCAATAGCCAAGTACATGGAAGAGAAGCACAA
GGATGAGCTCCCAGCGAATTTCAGGAAAATATTGGCAGTGCAGCTGAAGC
ACTTTGCCGCGAAAGGAAATCTCATCAAGATCAGGGCCTCTTACAAGCTC
TCTGAAGCGGCAGCTGGCAAAACCAAAAAAGAGATCAAGACCAAGGCCAA
GGCCCCAAGGAAAACAAGGTCCGTAACTGCTGCAGCTAAAATCAAAGCAG
AGTCCGCCGCCGCCGCTCCTCCTCCGCCTAAGAAGGCAAAGAAATCAGCT
GCTGCCAAACCAAAGCAGCCCAAATCCATCAAGTCCCCTGCTGCTAAGAA
AGCCAAGAAAGCTGCTGCCCAGTAGTAATATGTATGATATAATACTAGTA
AAGTACAAACTAGTTTCAACTTTCTTGTCTGTTAAGAAGTATCATGTACA
TGTCAACTCCCGGTATGATCGTGTTTTGCATAAATGAATGTAATGATCTC
CCGACTTTTGGTTTGGTTTAATGGGTACCTTTTCGGCTTGTAATGTGGCC
AAAAAAAAAAAAAAAAAAAAAAAAA
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