CK932999

Overview
NameCK932999
Unique NameCK932999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7950 contig Csv1_Contig7950:79..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: CTU1_ARATH (Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 3.539e-91
Identity = 163/189 (86.24%), Postives = 178/189 (94.18%), Query Frame = 2
Query:  236 ESKSKKA-GGRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799
            E+K+KKA   RLC  CN R+  LKRPKTL+QICRECFYEVFEEEIHQVIV N+LFK+GER+AIGASGGKDSTVLA+VLSELNRRHNYGLDLFLLSIDEGI+GYRDDSL+TVKRNE+QYGLPLKIVSYKDLYGWTMDEIVK+IGLKNNCTFCGVFRRQALDRGA+LLKV+K+ TGHNADDIAETVLLN L
Sbjct:    2 EAKNKKAVASRLCCLCNLRRPVLKRPKTLQQICRECFYEVFEEEIHQVIVQNRLFKSGERVAIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSIDEGITGYRDDSLETVKRNEVQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVEKLVTGHNADDIAETVLLNIL 190          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: CTU1_ORYSJ (Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza sativa subsp. japonica GN=NCS6 PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 5.651e-89
Identity = 158/183 (86.34%), Postives = 170/183 (92.90%), Query Frame = 2
Query:  251 KAGGRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799
            +AG RLC+ C +RKAALKRPKTLEQICRECFY VFE+EIHQ IV N LFK G+R+AIGASGGKDSTVLA+VLSELNRRH Y LDLFLLS+DEGI+GYRDDSL+TVKRNEIQYGLPLKIVSYKDLYGWTMD+IVK IGLKNNCTFCGVFRRQALDRGA+LLKVDKI TGHNADDIAETVLLN L
Sbjct:   14 RAGSRLCTRCGERKAALKRPKTLEQICRECFYVVFEDEIHQTIVDNNLFKPGDRVAIGASGGKDSTVLAYVLSELNRRHKYCLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLKIVSYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKIVTGHNADDIAETVLLNIL 196          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: CTU1_CHLRE (Cytoplasmic tRNA 2-thiolation protein 1 OS=Chlamydomonas reinhardtii GN=NCS6 PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.306e-77
Identity = 137/179 (76.54%), Postives = 155/179 (86.59%), Query Frame = 2
Query:  263 RLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799
            RLC  CN  +A L RPKT EQ+CRECF+  FEEE+HQ IV N+LFK GER+A+ ASGGKDSTVLA ++S LN R+NYGLDLFLLSIDEGI+GYRDDSL+TVKRNE QYG+PLK+VSYK+LYGWTMDEIV  IG KNNCTFCGVFRRQALDRGA L+  +KIATGHNADD+AETVLLN L
Sbjct:    4 RLCVRCNTSRAMLNRPKTQEQVCRECFFTAFEEEVHQTIVDNKLFKHGERLAVAASGGKDSTVLAHIMSTLNARYNYGLDLFLLSIDEGITGYRDDSLETVKRNEQQYGIPLKVVSYKELYGWTMDEIVSQIGTKNNCTFCGVFRRQALDRGAVLMGANKIATGHNADDVAETVLLNIL 182          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: CTU1_DICDI (Cytoplasmic tRNA 2-thiolation protein 1 OS=Dictyostelium discoideum GN=ctu1 PE=2 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 7.921e-75
Identity = 132/188 (70.21%), Postives = 158/188 (84.04%), Query Frame = 2
Query:  236 ESKSKKAGGRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799
            E+ + K   +LC  CN  +  LKRPKT E IC+ECFY VFE+EIH  I+ N LFK G+R+AIGASGGKDSTVLA +++ LN++++YGLDLFLLSIDEGI+GYRDDSL+TVKRN+ QY +PLKI+SYK+LY WTMD+IVK IGLK NCTFCGVFRRQALDRGA +LK +KI TGHNADDIAETVL+N L
Sbjct:    2 ENTATKKKSKLCEVCNVSRPVLKRPKTGEMICKECFYTVFEDEIHHTIISNNLFKRGDRVAIGASGGKDSTVLAEIMTLLNKKYDYGLDLFLLSIDEGITGYRDDSLETVKRNQEQYQIPLKILSYKELYNWTMDDIVKEIGLKGNCTFCGVFRRQALDRGAVMLKANKIVTGHNADDIAETVLMNLL 189          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: CTU1_USTMA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Ustilago maydis GN=NCS6 PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.652e-72
Identity = 127/179 (70.95%), Postives = 150/179 (83.80%), Query Frame = 2
Query:  263 RLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799
            +LC  CN  +A L+RPKT +QIC+ECF+ VFE E+H  IV N LFK G+R+AIGASGGKDSTVLA  +  LN R++YGLDLFLLSIDEGI+GYRDDSL+TVKRN+ QY LPLK++ Y +LYGWTMD+IVK +G KNNCTFCGVFRRQALDRGA+ L VD I TGHNADD+AETVL+N L
Sbjct:    4 KLCVICNAERAVLRRPKTAQQICKECFFYVFETEVHHTIVSNNLFKRGDRVAIGASGGKDSTVLAHCMKVLNERYDYGLDLFLLSIDEGITGYRDDSLETVKRNQQQYQLPLKVLGYGELYGWTMDDIVKSVGRKNNCTFCGVFRRQALDRGAAALGVDHIVTGHNADDVAETVLMNVL 182          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: CTU1_XENTR (Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus tropicalis GN=ctu1 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.277e-72
Identity = 127/177 (71.75%), Postives = 150/177 (84.75%), Query Frame = 2
Query:  269 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799
            CS+C +R+A L+RPKT   +C++CF+  FEEEIH  IV  +LF  GE++ IGASGGKDSTVLA VL  LN R+ YGLDL L+S+DEGISGYRDDSL+TVKRN+ QY LPLKIVSY++LYGWTMD+IVK +GLKNNCTFCGVFRRQALDRGA +L V+KI TGHNADDIAETVL+N L
Sbjct:    5 CSSCEERRAVLRRPKTGHSLCKDCFFHAFEEEIHHTIVSAKLFNPGEKVGIGASGGKDSTVLAHVLKVLNERYAYGLDLILVSVDEGISGYRDDSLETVKRNQQQYELPLKIVSYQELYGWTMDQIVKQVGLKNNCTFCGVFRRQALDRGAMMLGVNKICTGHNADDIAETVLMNFL 181          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: CTU1_CRYNE (Cytoplasmic tRNA 2-thiolation protein 1 OS=Cryptococcus neoformans GN=NCS6 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.071e-71
Identity = 127/178 (71.35%), Postives = 155/178 (87.08%), Query Frame = 2
Query:  269 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIV-GNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799
            CS C+  +A +KRPKT +Q+C++CF+EVFE E+H  IV G  +FK GER+AIGASGGKDSTVLA VLS LN+R++YGLDL+LLSIDEGI+GYRDDSL+TVK+N+ +YGLPLKI+SY +LYGWTMD+IV+ +G KNNCTFCGVFRRQALDRGA+ L VD I TGHNADDIAETVL+N +
Sbjct:    6 CSLCHTARALVKRPKTGQQVCKDCFFEVFETEVHNTIVEGEGIFKRGERVAIGASGGKDSTVLAHVLSVLNKRYDYGLDLYLLSIDEGITGYRDDSLETVKQNQAEYGLPLKILSYSELYGWTMDKIVEQVGKKNNCTFCGVFRRQALDRGAAQLGVDHIVTGHNADDIAETVLMNIM 183          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: CTU1_ASHGO (Cytoplasmic tRNA 2-thiolation protein 1 OS=Ashbya gossypii GN=NCS6 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.071e-71
Identity = 124/185 (67.03%), Postives = 154/185 (83.24%), Query Frame = 2
Query:  245 SKKAGGRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799
            +K   G+LC  C+ RKA +KRPK L+++C+ CF+ VFE EIH  I+ N+LF+ GER+A+GASGGKDSTVLA++L  LN RH+YGL++ LLSIDEGI GYRDDSL TVKRN+ QYGLPLKIVSYKDLY WTMDEIV   G++N+CT+CGVFRRQALDRGA++L +  + TGHNADD+AETVL+N L
Sbjct:   12 AKVTAGQLCELCHARKALVKRPKNLQKVCKLCFFHVFETEIHNTIMENKLFQRGERVAVGASGGKDSTVLAYILKLLNERHDYGLEIVLLSIDEGIVGYRDDSLATVKRNQEQYGLPLKIVSYKDLYDWTMDEIVACAGMRNSCTYCGVFRRQALDRGAAMLDIHHVVTGHNADDMAETVLMNIL 196          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: CTU1_DANRE (Cytoplasmic tRNA 2-thiolation protein 1 OS=Danio rerio GN=ctu1 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.115e-71
Identity = 127/177 (71.75%), Postives = 147/177 (83.05%), Query Frame = 2
Query:  269 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799
            CS C Q++A LKRPKT   +C++CF+  FEEEIHQ I    LF  GE +AIGASGGKDSTVLA V+  LN R++YGL L LLS+DEGI+GYRDDSL+TVKRN+ QY LPLKIVSY++LYGWTMD IVK +GLKNNCTFCGVFRRQALDRGA +L VDKI TGHNADD+AETVL+N L
Sbjct:    5 CSNCEQKRAVLKRPKTGHSLCKDCFFWAFEEEIHQTITSAGLFNRGETVAIGASGGKDSTVLAHVMKLLNERYDYGLKLLLLSVDEGITGYRDDSLETVKRNQQQYELPLKIVSYEELYGWTMDAIVKQVGLKNNCTFCGVFRRQALDRGAMMLNVDKICTGHNADDVAETVLMNVL 181          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: CTU1_LACBS (Cytoplasmic tRNA 2-thiolation protein 1 OS=Laccaria bicolor (strain S238N-H82) GN=NCS6 PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.068e-71
Identity = 126/177 (71.19%), Postives = 148/177 (83.62%), Query Frame = 2
Query:  269 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799
            C+ C + KA +KRPKT EQICRECF+ VFE E+H  I    LFK G+R+AIGASGGKDSTVLA+V+  LN R+ YGL+LFLLSIDEGI+GYRDDSL+TVKRN+ QY +PLKI+SY +LYGWTMD IV  +G KNNCTFCGVFRRQALDRGA++L VD I TGHNADDIAETVL+N +
Sbjct:    6 CAICQKAKAMVKRPKTGEQICRECFFYVFETEVHNTITQANLFKPGDRVAIGASGGKDSTVLAYVMKMLNERYQYGLELFLLSIDEGITGYRDDSLETVKRNQQQYDMPLKILSYDELYGWTMDAIVSQVGRKNNCTFCGVFRRQALDRGAAMLNVDHIVTGHNADDIAETVLMNIM 182          
The following BLAST results are available for this feature:
BLAST of CK932999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CTU1_ARATH3.539e-9186.24Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabido... [more]
CTU1_ORYSJ5.651e-8986.34Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza s... [more]
CTU1_CHLRE1.306e-7776.54Cytoplasmic tRNA 2-thiolation protein 1 OS=Chlamyd... [more]
CTU1_DICDI7.921e-7570.21Cytoplasmic tRNA 2-thiolation protein 1 OS=Dictyos... [more]
CTU1_USTMA1.652e-7270.95Cytoplasmic tRNA 2-thiolation protein 1 OS=Ustilag... [more]
CTU1_XENTR6.277e-7271.75Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus... [more]
CTU1_CRYNE1.071e-7171.35Cytoplasmic tRNA 2-thiolation protein 1 OS=Cryptoc... [more]
CTU1_ASHGO1.071e-7167.03Cytoplasmic tRNA 2-thiolation protein 1 OS=Ashbya ... [more]
CTU1_DANRE3.115e-7171.75Cytoplasmic tRNA 2-thiolation protein 1 OS=Danio r... [more]
CTU1_LACBS4.068e-7171.19Cytoplasmic tRNA 2-thiolation protein 1 OS=Laccari... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004349_A03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932999 ID=CK932999; Name=CK932999; organism=Citrus sinensis; type=EST; length=801bp
GGGGAATAAAAGAAGTTTAGGGAATGAGAAGGTCCAGAGACTTTGGAGGG
GTGAGGGTGCCGGTCGGACCGCTGCTTTCATAACAGTTCCATTCCGAGAA
GCTGTTGCCGCACTGCAAAAGCAAACTCAAATCTTCAATTTTTCCCTCAT
AACCCAAACTTGATCTCTTGTAAGTCTGTTAGCTTGTCTCTTCATAGTTT
ACTTAGTGGGCCATTAACGGTCAATGGAGGTCGCCGAGTCGAAGTCCAAG
AAGGCCGGTGGCCGCCTTTGTTCCACCTGTAACCAGAGAAAGGCTGCCCT
CAAACGACCTAAAACCCTAGAACAGATATGTAGGGAGTGTTTCTATGAGG
TATTTGAGGAGGAGATCCACCAAGTCATTGTGGGAAATCAGCTATTCAAG
GCTGGTGAGCGTATTGCCATCGGCGCCTCTGGTGGAAAAGATTCCACTGT
CCTTGCTTTTGTGTTGTCAGAGCTGAACCGGCGTCACAACTATGGCCTTG
ATCTTTTCCTCCTATCAATTGATGAAGGCATTTCAGGATACAGGGATGAT
TCACTTCAAACTGTCAAAAGAAATGAAATTCAGTATGGTCTGCCACTGAA
GATTGTTTCATACAAGGATTTATATGGATGGACAATGGATGAGATAGTGA
AGGTGATCGGTTTAAAGAATAATTGCACCTTTTGTGGTGTTTTTCGTCGC
CAGGCCCTTGATCGAGGTGCTTCATTGTTGAAAGTAGACAAGATTGCAAC
GGGACATAATGCAGATGATATTGCAGAAACTGTTCTATTGAACNNNTTGC
G
back to top