CK933005

Overview
NameCK933005
Unique NameCK933005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13367 contig Csv1_Contig13367:52..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933005 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.298e-29
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 3
Query:  135 PNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEED 545
            PN   + ++GRVYCDTC+AGF T  T YIAGAKV++ECK   + ++  + +G TD+TGTY I + + H++ +C  VLV+SP+ DC  V   R+R+ V+LT   GIS   R AN +G+ K  P+  CA +L+    +D
Sbjct:   30 PNLPDYVIQGRVYCDTCRAGFVTNVTEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of CK933005 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.669e-27
Identity = 56/129 (43.41%), Postives = 85/129 (65.89%), Query Frame = 3
Query:  150 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPG---RERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLR 527
            F VEG+VYCD C+  F T  +TY+ GAKV +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS+  R AN +GFMK +P+  CA+ LR
Sbjct:   27 FFVEGKVYCDNCRTQFVTKLSTYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of CK933005 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.730e-26
Identity = 54/128 (42.19%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  141 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVL 524
            P+ F VEG+VYCDTC+  FET  +  + GA VK++C++  +    +S EG TD  G YK+ V+ DH++ +C+  +V SP+ DCK    G E++R+  +   GI +  R+AN + FMKAE + GC E L
Sbjct:   24 PEVFDVEGKVYCDTCRVQFETKLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of CK933005 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.913e-25
Identity = 56/133 (42.11%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  150 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLYQEED 545
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+  C  +L+ Y   D
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of CK933005 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.762e-24
Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  150 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLY 533
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+  C  +L+ Y
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of CK933005 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.054e-23
Identity = 55/136 (40.44%), Postives = 82/136 (60.29%), Query Frame = 3
Query:  150 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAP---GRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEEDV 548
            F V+G VYCDTC+  F T  +T + GA VK+EC++  +    +  E  TD  G Y I V+ D +D +C+  LV SP ++C  V+     ++ ++V LTS NG +S+ R AN++GFM+ EP+  C EVL+     DV
Sbjct:   30 FKVQGMVYCDTCRIQFMTRISTIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165          
BLAST of CK933005 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.676e-21
Identity = 45/130 (34.62%), Postives = 76/130 (58.46%), Query Frame = 3
Query:  132 RPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEV 521
            +P    F ++G+VYCDTC+AGF T  + +I GA ++++CKD+++  V ++  G T + G Y +LV  DH+++ C+  L+SS + DC  +         +    N ++  TR  N +GF K E +  CA+V
Sbjct:    5 QPPVSQFHIQGQVYCDTCRAGFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALPKCAQV 134          
BLAST of CK933005 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.494e-19
Identity = 43/130 (33.08%), Postives = 75/130 (57.69%), Query Frame = 3
Query:  132 RPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEV 521
            +P    F ++G+VYCDTC+A F T  + +I GA V+++CKD ++ +V ++  G T + G Y +L+  DH+++ C+  L+SS + DC  +         +    N ++  TR  N +GF+K E +  C +V
Sbjct:    5 QPPVSQFYIQGQVYCDTCRARFITELSEFIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNGTTRTINPLGFLKKEVLPKCPQV 134          
BLAST of CK933005 vs. ExPASy Swiss-Prot
Match: PLAL1_PLALA (Major pollen allergen Pla l 1 OS=Plantago lanceolata PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.168e-12
Identity = 45/130 (34.62%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  138 NPKPFSVEGRVYCDTCQA-GFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTV---APGR-ERSRVILTSYNGISSETRYANSMGFMKAEPMSGC 512
            +P  F VEG VYC+ C +       +  +AGA+V+++CKD  S +V+YS  G+TD  G Y++ V   H+D  C+  LV S + DC  +   A G  + S+V L+    I+ +TR+   + F       GC
Sbjct:    5 HPAKFHVEGEVYCNVCHSRNLINELSERMAGAQVQLDCKD-DSKKVIYSIGGETDQDGVYRLPVVGYHED--CEIKLVKSSRPDCSEIPKLAKGTIQTSKVDLSKNTTITEKTRHVKPLSFRAKTDAPGC 131          
The following BLAST results are available for this feature:
BLAST of CK933005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSC13_MAIZE8.298e-2944.53Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
OLEE1_BETVE2.669e-2743.41Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
LAT52_SOLLC1.730e-2642.19Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
PHLB_PHLPR1.913e-2542.11Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LOLB_LOLPR2.762e-2441.86Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
CHE1_CHEAL3.054e-2340.44Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
ALL1_OLEEU1.676e-2134.62Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
LIGV1_LIGVU3.494e-1933.08Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
PLAL1_PLALA3.168e-1234.62Major pollen allergen Pla l 1 OS=Plantago lanceola... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004348_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933005 ID=CK933005; Name=CK933005; organism=Citrus sinensis; type=EST; length=786bp
GAGGGTCTAGAATTCACTCATTTGCTCTCAATATTCAATCTTGTTCAGCT
TCCTTCATCTCCCATAAGACAATGGCTAGAATATTGTTGTTGATCGCTCT
ATGCGTGCTGCCGGCTCTGGTGAGCGCGGTCCGGCCCAACCCTAAACCGT
TCTCGGTTGAAGGACGCGTGTACTGCGACACCTGCCAAGCCGGCTTCGAG
ACCCCCGCCACCACCTACATCGCCGGTGCCAAGGTGAAGGTTGAATGCAA
AGACAGGAAGTCAATGCAGGTAGTATATAGCAGGGAAGGGAAAACAGACT
CAACTGGAACATATAAGATCCTCGTTTCAGAAGACCATCAGGATCAACTT
TGCGATGCTGTCCTCGTTAGCAGCCCCCAGAATGACTGCAAAACAGTTGC
CCCAGGGCGTGAGCGTTCCCGTGTGATCTTGACCAGTTACAACGGCATTT
CTTCTGAAACCCGATATGCCAATTCAATGGGCTTCATGAAGGCAGAGCCC
ATGTCTGGCTGTGCTGAGGTTCTCAGGCTATATCAGGAGGAGGATGTGTA
GAGAATGGTGTGGCATGGTTTTTTCTATCGCTTTCCATTTGTTTAAGCTT
TGTGTTGGCCCAGCTATCATACTGTCTCTTCTATTAGTAGTGCCTGGATG
GCTGTGTTGTTTCTATGTTTAGAGAATTCTTAATTTGTTGTTAAAGGACG
TGTACTCTATTAATTTATTTATATGCTGGTGCTTCTAGCTTTGAGATGTG
TTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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