CK933006

Overview
NameCK933006
Unique NameCK933006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933006_ssr446 microsatellite CK933006_ssr446:446..457. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6967 contig Csv1_Contig6967:72..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKB12_ARATH (Peptidyl-prolyl isomerase FKBP12 OS=Arabidopsis thaliana GN=FKBP12 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 4.351e-51
Identity = 89/111 (80.18%), Postives = 100/111 (90.09%), Query Frame = 3
Query:   39 MGIXXXILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            MG+   ++ PGNGPKP  GQ VTVHCTG+GK+GDLSQKFWSTKD GQ+PF+FQIGKG+VIKGWDEGV+GMQ+GEVARLRCS DYAYGAGGFP WGIQPNSVLDFEI+VL V
Sbjct:    1 MGVEKQVIRPGNGPKPAPGQTVTVHCTGFGKDGDLSQKFWSTKDEGQKPFSFQIGKGAVIKGWDEGVIGMQIGEVARLRCSSDYAYGAGGFPAWGIQPNSVLDFEIEVLSV 111          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKB12_VICFA (Peptidyl-prolyl isomerase FKBP12 OS=Vicia faba GN=FKBP12 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.266e-50
Identity = 89/110 (80.91%), Postives = 98/110 (89.09%), Query Frame = 3
Query:   39 MGIXXXILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQ 368
            MG+   I+  G GP P  GQ VTVHCTGYGKNGDLSQKFWSTKDPGQ PFTF+IG+GSVIKGWDEGV+GMQ+GEVARLRCSPDYAYGAGGFP WGIQPNSVL+FEI+VL+
Sbjct:    1 MGVEKQIIRAGTGPNPSRGQNVTVHCTGYGKNGDLSQKFWSTKDPGQNPFTFKIGQGSVIKGWDEGVLGMQLGEVARLRCSPDYAYGAGGFPAWGIQPNSVLEFEIEVLR 110          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKB12_DROME (12 kDa FK506-binding protein OS=Drosophila melanogaster GN=FK506-bp2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 8.004e-21
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 3
Query:   39 MGIXXXILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            MG+    + PG+G   P  GQKVTVH TG   +G    KF S++D  + PF F IGKG VI+GWDEGV  + VG+ A+L CSPDYAYG+ G P   I PNS L F++++L+V
Sbjct:    1 MGVQVVPIAPGDGSTYPKNGQKVTVHYTGTLDDGT---KFDSSRDRNK-PFKFTIGKGEVIRGWDEGVAQLSVGQRAKLICSPDYAYGSRGHP-GVIPPNSTLTFDVELLKV 107          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP_GIBZE (FK506-binding protein 1 OS=Gibberella zeae GN=FPR1 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.329e-20
Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 3
Query:   39 MGIXXXILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVG 374
            MG+   I+T G+GP P  GQKVT+  TG+ +  D ++        G+  F   IG G VIKGWDEGV  M++GE A L  SPDY YG  GFP   I PNS L F++++ ++G
Sbjct:    1 MGVEKTIITQGSGPSPQVGQKVTMEYTGWLQKEDGTKGDQFDTSVGRGDFVVNIGVGQVIKGWDEGVTQMKLGEKATLHISPDYGYGPRGFP-GAIPPNSTLIFDVELKKIG 111          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP_ASPOR (FK506-binding protein 1 OS=Aspergillus oryzae GN=fpr1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.188e-20
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 3
Query:   39 MGIXXXILTPGNGPKPVAGQKVTVHCTGY------GKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYG---AGGFPQWGIQPNSVLDFEIQVLQV 371
            MG+   I+T G+GP P +G KV++H TG+         G   ++F S++ PG+ P    IG+G VIKGWDEGVM M +GE + L  +PDY YG   AG  P      NS L FE+++L++
Sbjct:    1 MGVERKIITRGSGPSPASGDKVSIHYTGWIYDPKKANKGFQGKQFDSSRSPGRGPLVVNIGQGKVIKGWDEGVMQMSLGEKSTLTITPDYGYGDKAAGKIP-----ANSTLIFEVELLKI 115          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKB1A_EMENI (FK506-binding protein 1A OS=Emericella nidulans GN=fprA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.156e-19
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 3
Query:   39 MGIXXXILTPGNG---PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKD-PGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            MG+    ++PG+G   PKP  G  V++H TG   +G    KF S++D PG   F  QIG G VIKGWDEGV+ + VGE A+L C+PDYAYGA GFP   I PN+ L FE+++L++
Sbjct:    1 MGVEVQRISPGDGKNFPKP--GDTVSIHYTGTLADGS---KFDSSRDRPGT--FVTQIGVGRVIKGWDEGVLQLSVGEKAKLICTPDYAYGARGFPP-VIPPNATLTFEVELLKI 107          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP1_RHIOR (FK506-binding protein 1 OS=Rhizopus oryzae GN=FKBP1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.736e-19
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = 3
Query:   39 MGIXXXILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            MG+    + PG+G   P  G  VT+H TG  +NG +    + +     +PF  QIG G VIKGWDEGV+ + +G+ A L C+PDYAYG  GFP   I PN+ L+FE+++L++
Sbjct:    1 MGVTVETIQPGDGKNFPKKGDTVTMHYTGTLQNGSV----FDSSVRRNEPFVTQIGVGRVIKGWDEGVLQLSLGQKANLICTPDYAYGPRGFPP-VIPPNATLNFEVELLKI 107          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP_CRYNV (FK506-binding protein 1 OS=Cryptococcus neoformans var. grubii GN=FRR1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.784e-19
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 3
Query:   39 MGIXXXILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            MG+    ++ G+G   P  G  VT+H  G   +G    KF S++D G  PF  +IG+G VI+GWDEGV  + VG+ A L C+PDYAYGA GFP   I PNS L FE+++L+V
Sbjct:    1 MGVTVENISAGDGKTFPQPGDNVTIHYVGTLLDGS---KFDSSRDRGT-PFVCRIGQGQVIRGWDEGVPQLSVGQKANLICTPDYAYGARGFPP-VIPPNSTLKFEVELLKV 107          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP_CRYNE (FK506-binding protein 1 OS=Cryptococcus neoformans GN=FPR1 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.669e-18
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 3
Query:   39 MGIXXXILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            MG+    ++ G+G   P  G  VT+H  G   +G    KF S++D G  PF  +IG+G VI+GWDEGV  + +G+ A L C+PDYAYGA GFP   I PNS L FE+++L++
Sbjct:    1 MGVTVENISAGDGKTFPQPGDSVTIHYVGTLLDGS---KFDSSRDRGT-PFVCRIGQGQVIRGWDEGVPQLSIGQKANLICTPDYAYGARGFPP-VIPPNSTLKFEVELLKI 107          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKB1A_XENLA (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Xenopus laevis GN=fkbp1a PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 6.342e-18
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = 3
Query:   39 MGIXXXILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            MG+    +T G+G   P  GQ V VH  G  +NG   +KF S++D  + PF F IG+  VI+GW+EGV  M VG+ ARL CSPD+AYGA G P   I PN+ L F++++L++
Sbjct:    1 MGVQVETITEGDGRTFPKKGQTVVVHYVGSLENG---KKFDSSRDRNK-PFKFIIGRCEVIRGWEEGVAQMSVGQRARLTCSPDFAYGATGHPGI-IPPNATLTFDVELLRL 107          
The following BLAST results are available for this feature:
BLAST of CK933006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FKB12_ARATH4.351e-5180.18Peptidyl-prolyl isomerase FKBP12 OS=Arabidopsis th... [more]
FKB12_VICFA1.266e-5080.91Peptidyl-prolyl isomerase FKBP12 OS=Vicia faba GN=... [more]
FKB12_DROME8.004e-2150.8912 kDa FK506-binding protein OS=Drosophila melanog... [more]
FKBP_GIBZE2.329e-2045.54FK506-binding protein 1 OS=Gibberella zeae GN=FPR1... [more]
FKBP_ASPOR5.188e-2042.50FK506-binding protein 1 OS=Aspergillus oryzae GN=f... [more]
FKB1A_EMENI1.156e-1949.57FK506-binding protein 1A OS=Emericella nidulans GN... [more]
FKBP1_RHIOR5.736e-1943.75FK506-binding protein 1 OS=Rhizopus oryzae GN=FKBP... [more]
FKBP_CRYNV9.784e-1947.32FK506-binding protein 1 OS=Cryptococcus neoformans... [more]
FKBP_CRYNE1.669e-1845.54FK506-binding protein 1 OS=Cryptococcus neoformans... [more]
FKB1A_XENLA6.342e-1846.43Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Xeno... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_H02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933006 ID=CK933006; Name=CK933006; organism=Citrus sinensis; type=EST; length=579bp
GGGGACCAGAAAGTCCAATCCCTAAGACAGAGAAGGAGATGGGAATAGNN
NNGNAAATTTTGACCCCAGGAAACGGTCCTAAGCCGGTTGCTGGTCAGAA
GGTTACCGTCCACTGCACTGGCTACGGGAAAAATGGCGATCTGTCTCAGA
AGTTCTGGAGCACAAAGGACCCTGGGCAGCAGCCTTTTACATTCCAGATT
GGCAAAGGCTCTGTTATAAAAGGATGGGATGAAGGTGTGATGGGAATGCA
GGTGGGAGAAGTTGCTCGTCTGCGGTGCTCCCCAGATTACGCCTATGGTG
CTGGTGGATTTCCACAATGGGGGATTCAACCTAACTCAGTCCTGGATTTT
GAGATACAAGTCCTGCAGGTAGGATAAGCACCTCATAAAGGCAGAAAACC
ATCTAGAAAATTCTATGGTTTTAAATAAATTGTCTTACCATGGACATGTA
TGTATGTTATCCTGAACTCCTGATAAATATCAGATGGCTATGATGGAACG
ATCTTTTTTTTCGACGTTTTAATAACACTACATGTGCAACTTTTTAGCAC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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