CK933016

Overview
NameCK933016
Unique NameCK933016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6950 contig Csv1_Contig6950:2..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933016 vs. ExPASy Swiss-Prot
Match: PGDH_MACFA (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Macaca fascicularis GN=HPGD PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = 2
Query:  224 GLSALVTGGASGIGRALSLALAGKGVFVTVVDFSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVANTRDTAAAFEKHVATYGGLDICINGAGISNPIPFPKDQTDGTRSWRFTLDVNLIAVIDCTQKAIGIM 631
            G  ALVTG A GIGRA + AL  KG  V +VD++ E G +  A +++   KF         +FI+CDVA+ +     F K V  +G LDI +N AG++N            ++W  TL +NL++VI  T   +  M
Sbjct:    5 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDE---KFEPQ----KTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNN-----------EKNWEKTLQINLVSVISGTYLGLDYM 122          
BLAST of CK933016 vs. ExPASy Swiss-Prot
Match: PGDH_HUMAN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Homo sapiens GN=HPGD PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  224 GLSALVTGGASGIGRALSLALAGKGVFVTVVDFSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVANTRDTAAAFEKHVATYGGLDICINGAGISNPIPFPKDQTDGTRSWRFTLDVNLIAVIDCTQKAIGIM 631
            G  ALVTG A GIGRA + AL  KG  V +VD++ E G +  A ++++             +FI+CDVA+ +     F K V  +G LDI +N AG++N            ++W  TL +NL++VI  T   +  M
Sbjct:    5 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDEQFEP-------QKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNN-----------EKNWEKTLQINLVSVISGTYLGLDYM 122          
BLAST of CK933016 vs. ExPASy Swiss-Prot
Match: DHR11_CHICK (Dehydrogenase/reductase SDR family member 11 OS=Gallus gallus GN=DHRS11 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 2
Query:  209 MELKPGLSALVTGGASGIGRALSLALAGKGVFVTVVDFSEEKGKEVAALVEKENAKFHSNLGFPSAMF-IRCDVANTRDTAAAFEKHVATYGGLDICINGAGISNPIPFPKDQTDGTRSWRFTLDVNLIAVIDCTQKAIGIMQ 634
            ME   G  ALVTG + GIG A++ AL   G+ V     S +K +++AA  +        + G+P  +   +CD++N  +  + F      + G+D+CIN AG++ P P    +T+G   WR  +DVN++AV  CT++A   M+
Sbjct:    1 MERWTGRVALVTGASVGIGAAVARALVQHGMKVVGCARSVDKIEKLAAECQ--------SAGYPGTLIPYKCDLSNEEEILSMFSAIKTLHQGVDVCINNAGLARPEPLLSGKTEG---WRTMIDVNVMAVSICTREAYQSMK 132          
BLAST of CK933016 vs. ExPASy Swiss-Prot
Match: PGDH_CAVPO (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Cavia porcellus GN=HPGD PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 48/136 (35.29%), Postives = 69/136 (50.74%), Query Frame = 2
Query:  224 GLSALVTGGASGIGRALSLALAGKGVFVTVVDFSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVANTRDTAAAFEKHVATYGGLDICINGAGISNPIPFPKDQTDGTRSWRFTLDVNLIAVIDCTQKAIGIM 631
            G  ALVTG A GIGRA +  L  KG  V +VD++ E G +  A +++E             +FI+CDVA+       F K V  +G LDI +N AG++N            ++W  TL +NL++VI  T   +  M
Sbjct:    5 GKVALVTGAAQGIGRAFAEGLLHKGAKVALVDWNLEAGVKCKAALDEEFEP-------QKTLFIQCDVADQEQLRDTFTKVVDYFGRLDILVNNAGVNN-----------EKNWEKTLQINLVSVISGTYLGLDYM 122          
BLAST of CK933016 vs. ExPASy Swiss-Prot
Match: PGDH_BOVIN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bos taurus GN=HPGD PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  224 GLSALVTGGASGIGRALSLALAGKGVFVTVVDFSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVANTRDTAAAFEKHVATYGGLDICINGAGISNPIPFPKDQTDGTRSWRFTLDVNLIAVIDCTQKAIGIM 631
            G  ALVTG A GIGRA + AL  KG  V +VD++ E G +  A ++++             +FI+CDVA+       F K V  +G LDI +N AG++N            ++W  TL +NL++VI  T   +  M
Sbjct:    5 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVKCKAALDEQFEP-------QKTLFIQCDVADQEQLRDTFRKVVDHFGKLDILVNNAGVNN-----------EKNWEKTLQINLVSVISGTYLGLDYM 122          
BLAST of CK933016 vs. ExPASy Swiss-Prot
Match: PGDH_RAT (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Rattus norvegicus GN=Hpgd PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  224 GLSALVTGGASGIGRALSLALAGKGVFVTVVDFSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVANTRDTAAAFEKHVATYGGLDICINGAGISNPIPFPKDQTDGTRSWRFTLDVNLIAVIDCTQKAIGIM 631
            G  ALVTG A GIG+A + AL   G  V +VD++ E G +  A ++++             +FI+CDVA+ +     F K V  +G LDI +N AG++N            ++W  TL +NL++VI  T   +  M
Sbjct:    5 GKVALVTGAAQGIGKAFTEALLLHGAKVALVDWNLETGVKCKAALDEQFEP-------QKTLFIQCDVADQKQLRDTFRKVVDHFGRLDILVNNAGVNN-----------EKNWEQTLQINLVSVISGTYLGLDYM 122          
BLAST of CK933016 vs. ExPASy Swiss-Prot
Match: PGDH_MOUSE (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mus musculus GN=Hpgd PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 45/136 (33.09%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  224 GLSALVTGGASGIGRALSLALAGKGVFVTVVDFSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVANTRDTAAAFEKHVATYGGLDICINGAGISNPIPFPKDQTDGTRSWRFTLDVNLIAVIDCTQKAIGIM 631
            G  ALVTG A GIG+A + AL   G  V +VD++ E G +  A ++++             +F++CDVA+ +     F K V  +G LDI +N AG++N            ++W  TL +NL++VI  T   +  M
Sbjct:    5 GKVALVTGAAQGIGKAFAEALLLHGAKVALVDWNLEAGVKCKAALDEQFEP-------QKTLFVQCDVADQKQLRDTFRKVVDHFGRLDILVNNAGVNN-----------EKNWEQTLQINLVSVISGTYLGLDYM 122          
BLAST of CK933016 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 46/141 (32.62%), Postives = 66/141 (46.81%), Query Frame = 2
Query:  224 GLSALVTGGASGIGRALSLALAGKGVFVTVVDFSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVANTRDTAAAFEKHVATYGGLDICINGAGISNPIPFPKDQTDGTRSWRFTLDVNLIAVIDCTQKAIGIMQAAKK 646
            G  A++TGGASGIG   +      G  V V D  +E G  + A            LG  ++ ++ CDV N  D AAA +  VA +G LD+  N AG+S P  F   +      +   L VNL+     T+ A  +M  A++
Sbjct:   17 GKVAVITGGASGIGACTARLFVKHGARVVVADIQDELGASLVA-----------ELGPDASSYVHCDVTNEGDVAAAVDHAVARFGKLDVMFNNAGVSGPPCFRMSECT-KEDFERVLAVNLVGPFLGTKHAARVMAPARR 145          
BLAST of CK933016 vs. ExPASy Swiss-Prot
Match: YUXG_BACSU (Uncharacterized oxidoreductase yuxG OS=Bacillus subtilis GN=yuxG PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 44/136 (32.35%), Postives = 68/136 (50.00%), Query Frame = 2
Query:  194 LPVHKMELKPGLS------ALVTGGASGIGRALSLALAGKGVFVTVVDFSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVANTRDTAAAFEKHVATYGGLDICINGAGISNPIPFPKDQTDGTRSWRFTLDV 583
            L ++K+ L P  +      AL+TGGA GIG A     A +G  V V D + E  +++A        + +   G   AM ++ DV    D  +AFE+    YGG+DI +N AG++   PF  D+T   + W   ++V
Sbjct:  411 LELYKLTLAPPEAEFSRKVALITGGAGGIGSAACRRFAAEGGHVIVADLNIEGAQKIAG-------EINDAYGKGRAMAVKMDVTKEEDVQSAFERAALAYGGIDIVVNNAGLATSSPF--DET-SLKEWNLNMNV 536          
BLAST of CK933016 vs. ExPASy Swiss-Prot
Match: DHR11_BOVIN (Dehydrogenase/reductase SDR family member 11 OS=Bos taurus GN=DHRS11 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 44/138 (31.88%), Postives = 72/138 (52.17%), Query Frame = 2
Query:  233 ALVTGGASGIGRALSLALAGKGVFVTVVDFSEEKGKEVAALVEKENAKFHSNLGFPSAMF-IRCDVANTRDTAAAFEKHVATYGGLDICINGAGISNPIPFPKDQTDGTRSWRFTLDVNLIAVIDCTQKAIGIMQAAK 643
            ALVTG + GIG A++ AL  +G+ V     +    +E+AA  +        + G+P  +   RCD++N  D  + F    + + G+DICIN AG++ P       T G   W+   +VN++A+  CT++A   M+  K
Sbjct:    9 ALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK--------SAGYPGTLIPYRCDLSNEEDILSMFSAVRSQHSGVDICINNAGLARPDTLLSGSTSG---WKEMFNVNVLALSICTREACQSMRERK 135          
The following BLAST results are available for this feature:
BLAST of CK933016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PGDH_MACFA7.414e-1436.7615-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ma... [more]
PGDH_HUMAN1.652e-1335.2915-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ho... [more]
DHR11_CHICK1.652e-1333.57Dehydrogenase/reductase SDR family member 11 OS=Ga... [more]
PGDH_CAVPO2.817e-1335.2915-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ca... [more]
PGDH_BOVIN2.817e-1335.2915-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bo... [more]
PGDH_RAT1.826e-1233.8215-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ra... [more]
PGDH_MOUSE2.385e-1233.0915-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mu... [more]
MOMAS_ORYSJ6.939e-1232.62Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
YUXG_BACSU2.637e-1132.35Uncharacterized oxidoreductase yuxG OS=Bacillus su... [more]
DHR11_BOVIN5.874e-1131.88Dehydrogenase/reductase SDR family member 11 OS=Bo... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004348_G06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933016 ID=CK933016; Name=CK933016; organism=Citrus sinensis; type=EST; length=669bp
GGGGGGCGCGCAAATCGTTTTCCGGCGAGAGATATGGGAAGCCGTCTTGA
TAACATCCCCCCTTCATTTGGCAATTTAGAGTAACAACAAATTTCAGTAT
GTTACAAATAAATACCCGGAAAAAGGGACAGTAAAAGCCCGCTCACATAA
GAAAACTCTTAACCGAGTAGTTTAATCGCTTCCCTTTGACTCTCTGCCTG
TTCATAAAATGGAGCTCAAGCCGGGCTTATCAGCTTTGGTCACCGGCGGT
GCATCTGGGATTGGTAGAGCTTTGAGTTTAGCTCTTGCAGGGAAGGGAGT
CTTTGTGACAGTTGTTGATTTCTCTGAAGAAAAGGGAAAGGAAGTTGCAG
CGCTTGTTGAAAAAGAGAATGCCAAGTTTCATTCAAACTTAGGATTTCCA
TCTGCTATGTTTATAAGATGTGATGTGGCCAACACAAGAGATACAGCTGC
TGCTTTTGAGAAGCACGTAGCTACATATGGAGGATTGGATATATGTATCA
ACGGTGCTGGGATAAGTAATCCTATTCCATTCCCAAAGGATCAAACTGAT
GGCACACGTTCATGGAGATTCACTCTTGATGTGAACTTGATTGCAGTTAT
TGATTGCACTCAGAAAGCTATTGGAATTATGCAAGCTGCAAAAAAAGCCT
GGAGTGATTATAAATATGG
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