CK933021

Overview
NameCK933021
Unique NameCK933021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6870 contig Csv1_Contig6870:85..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933021 vs. ExPASy Swiss-Prot
Match: NDUA2_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo pygmaeus GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   36 MKELXXLLCQXXXXXXXXXXFVERNYKELETLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLVR 278
            ++E+   LCQ          F+E+ Y EL+  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE++++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of CK933021 vs. ExPASy Swiss-Prot
Match: NDUA2_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo abelii GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   36 MKELXXLLCQXXXXXXXXXXFVERNYKELETLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLVR 278
            ++E+   LCQ          F+E+ Y EL+  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE++++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of CK933021 vs. ExPASy Swiss-Prot
Match: NDUA2_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus GN=NDUFA2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   36 MKELXXLLCQXXXXXXXXXXFVERNYKELETLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 275
            ++E+   LCQ          F+E+ Y EL+  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVSLNNFSADQVTRALENVL 95          
BLAST of CK933021 vs. ExPASy Swiss-Prot
Match: NDUA2_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicularis GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.227e-13
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   36 MKELXXLLCQXXXXXXXXXXFVERNYKELETLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 275
            ++E+   LCQ          F+E+ Y EL+  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVL 95          
BLAST of CK933021 vs. ExPASy Swiss-Prot
Match: NDUA2_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens GN=NDUFA2 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 3
Query:   36 MKELXXLLCQXXXXXXXXXXFVERNYKELETLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 275
            ++E+   LCQ          F+E+ Y EL+  NP LPILIRECS ++P+LWARY  G E  + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of CK933021 vs. ExPASy Swiss-Prot
Match: NDUA2_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Mus musculus GN=Ndufa2 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12
Identity = 32/87 (36.78%), Postives = 53/87 (60.92%), Query Frame = 3
Query:   15 AVQLSRSMKELXXLLCQXXXXXXXXXXFVERNYKELETLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 275
            AV     ++E+   LCQ          F+ + Y EL+  +P LPILIRECS ++P+LWARY  G EK + L+ L+  ++ +A+++++
Sbjct:    9 AVGAKLGLREIRVHLCQRSPGSQGVRDFIVQRYVELKKAHPNLPILIRECSEVQPKLWARYAFGQEKTVSLNNLSADEVTRAMQNVL 95          
BLAST of CK933021 vs. ExPASy Swiss-Prot
Match: NDUA2_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Gorilla gorilla gorilla GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:   36 MKELXXLLCQXXXXXXXXXXFVERNYKELETLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 275
            ++E+   LCQ          F+E+ Y EL+  N  LPILIRECS ++P+LWARY  G E  + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSRGVRDFIEKRYVELKKANSDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
The following BLAST results are available for this feature:
BLAST of CK933021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NDUA2_PONPY7.196e-1441.98NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_PONAB7.196e-1441.98NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_BOVIN7.196e-1442.50NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MACFA1.227e-1342.50NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_HUMAN6.092e-1341.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MOUSE5.157e-1236.78NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_GORGO5.157e-1240.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004348_E07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933021 ID=CK933021; Name=CK933021; organism=Citrus sinensis; type=EST; length=573bp
GGGGATGGCATGGAGCGGTACAATTATCTCGGAGCATGAAGGAACTGNNG
NNCTTACTCTGCCAGACTTCTCCTTCAAGCTCCTCCACTAGATCATTTGT
AGAGAGGAACTACAAGGAGTTGGAGACTTTAAACCCCAAACTTCCTATCT
TGATTCGTGAGTGCAGTGGGATTGAGCCCCAGTTATGGGCTAGATATGAT
ATGGGTGTTGAGAAGGGCATTGGTTTGGATGGTCTGAATGAGGCACAGAT
CGCAAAGGCACTCGAAGACCTTGTCAGAGCTGGGGAAGCCCTTAAGCGTT
GATATTGCTACTCTTTGATCCATATGAGATGAAATAAATGTGTTAGAAAA
ATCTTCCTATGACAGTTTGCTCTTTTATTTAGCAATCATTTTGATGTACT
TTGCATGGTTGTCCAATATCTTGATTATTATCTGCATTAGCATATTATAC
TCTCCATCCATACCTTTCAGCTCAACCAATGCTAATGTAATACCAAAATA
ACACTGATCAGGAATTATCTTTGAATTAAGACTTATCTTTTTCCGAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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