CK933029

Overview
NameCK933029
Unique NameCK933029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1515 contig Csv1_Contig1515:1..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933029 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 35/60 (58.33%), Postives = 39/60 (65.00%), Query Frame = 2
Query:  494 ECPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 673
            +CP +CD RC +TQY K               VPPGYYGNK VC CYNNWKT+EGGPKCP
Sbjct:   47 QCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of CK933029 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.341e-14
Identity = 33/60 (55.00%), Postives = 36/60 (60.00%), Query Frame = 2
Query:  494 ECPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 673
            +C  KC  RCS+T Y+KP              VP G YGNK  CPCYNNWKTK GGPKCP
Sbjct:   53 DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CK933029 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.836e-13
Identity = 35/75 (46.67%), Postives = 41/75 (54.67%), Query Frame = 2
Query:  461 TFSN----HMCLE*PECPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 673
            TFSN    +  L   +C  +C  RCS T ++KP              VP G YGNK  CPCYNNWKT+EG PKCP
Sbjct:   22 TFSNVVEGYNKLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
The following BLAST results are available for this feature:
BLAST of CK933029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GASA4_ARATH8.597e-1758.33Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
GAST1_SOLLC2.341e-1455.00Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC9.836e-1346.67Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004348_D09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933029 ID=CK933029; Name=CK933029; organism=Citrus sinensis; type=EST; length=870bp
GGGGGAAGCAAAACCAACCCCTCTTCAGTCTTTACAATTTCTTGTTTCTC
TCTTGTGCTTGTTTCGAGTCCTGTTCCACTTTAAGAGGGGTTTGTTTGTT
AATTTGTAGCAAGTTTAAGGGCCATGGCTAAATCGTTTGCCATCTTCATC
TTGGCTCTCTTTGCCATCTCCATGCTTCAAACAATGGCCGTGGCAGCAAA
TGGGCAGGGAGGTCGGCACTATGATTCGAAACATTACGGACCTGGGACTG
TCAAAAGCTACCGTAAGTTTCTCAACTCTCAAATAACCGTTTTCCATTAA
TTATTCACTTCCAAAAAACAAAAGCACAATGACCGATGTATGTGGGTAGA
GCAGAGAGTCCAAGTGTGGTCAAAACTCTTCGAAAGTTACAAAAGATAAT
GATGGTTTTATTTTTTTGACTATTTGTTTATTTTTTTTATTTATAATAAA
GAATACTACTACTTTCTCAAATCACATGTGTCTGGAATGACCAGAATGCC
CTGGAAAATGTGATACGAGATGCAGCCAGACCCAATACCGCAAGCCATGC
CTATTCTTTTGCAACAAGTGCTGCAAGAAGTGTCTGTGTGTGCCCCCTGG
CTACTATGGCAACAAGGCTGTGTGCCCTTGCTACAACAATTGGAAGACCA
AGGAAGGAGGACCTAAATGCCCTTAAGCATGCAGCTCTTCGCTTTCAAAA
TCTCTTCCTCTTTATCGTCACCTATTTTAAGTTTCGTTTTGTTGTATTAT
CATCGCAGCCACTGTGATGCTATTCTACTATTACTTACTAACTTCAAAAT
TCAATACGCACCGGCCAGCCCCTTTTTTCTATATGTNNNGGTTTCTTTTG
ATGTGAGTCACTCCTTGAGG
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