CK933068

Overview
NameCK933068
Unique NameCK933068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933068 vs. ExPASy Swiss-Prot
Match: VP202_ARATH (Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana GN=VPS20.2 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.481e-73
Identity = 149/199 (74.87%), Postives = 161/199 (80.90%), Query Frame = 3
Query:  177 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLVVQEMPEVP-TEGPSEEQEKLDLPNVPTKVPVAS 770
            MGNLFVKKPKIT+VDRAILSLKTQRRKL QYQQQL+ VIEAEKQAARDLI                        VD WLINVEQQLADIEL SKQKAVFESLK G NAIKAIQSE+NL+DVQKLMDDT EAKAYQDE++AILGEKLSAEDEEEILAEFDNLE+ L+V++MPEVP TE   EE EK+DLP+VPTK PVAS
Sbjct:    1 MGNLFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARDLIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNAIKAIQSEVNLDDVQKLMDDTAEAKAYQDELSAILGEKLSAEDEEEILAEFDNLESLLIVEDMPEVPTTELMPEEPEKMDLPDVPTKAPVAS 199          
BLAST of CK933068 vs. ExPASy Swiss-Prot
Match: VP201_ARATH (Vacuolar protein sorting-associated protein 20 homolog 1 OS=Arabidopsis thaliana GN=VPS20.1 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.582e-72
Identity = 145/198 (73.23%), Postives = 161/198 (81.31%), Query Frame = 3
Query:  177 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLVVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVAS 770
            MGNLFVKKP+IT+VDRAILSLKTQRRKL QYQQ+L+ VIEAEKQAARDLI                        VD W+INVEQQL DIEL SKQKAVFESLK G +AIKAIQSE++L+DVQKLMDDT +AKAYQDE+NAILGEKLSAEDEE+ILAEFDNLE+QL+V EMPEVPT+  SEE EKLDLP+VPTK PVAS
Sbjct:    1 MGNLFVKKPQITEVDRAILSLKTQRRKLGQYQQKLEKVIEAEKQAARDLIREKRKDRALLALRKKRTQEELLKQVDQWVINVEQQLTDIELTSKQKAVFESLKQGNSAIKAIQSELDLDDVQKLMDDTADAKAYQDELNAILGEKLSAEDEEDILAEFDNLESQLIVDEMPEVPTK-ESEESEKLDLPDVPTKTPVAS 197          
BLAST of CK933068 vs. ExPASy Swiss-Prot
Match: CHMP6_DANRE (Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 8.646e-26
Identity = 68/201 (33.83%), Postives = 108/201 (53.73%), Query Frame = 3
Query:  177 MGNLFVKKP--KITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLVVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASR 773
            MGNLF KK   ++T+ DRA+L LK QR KL QYQ+++   ++ E+Q A+ L+                         +  + N+E+ + DIE A  +  V E LK G + +K +   +++E+V+K+MD+T +A  YQ +I+ +L   L+ EDEE +LAE + +       E+PEVP E         +LP VP + PV  +
Sbjct:    1 MGNLFGKKKATRVTEQDRAVLQLKQQRDKLKQYQKRITLQMDKERQLAKQLLKDGKKDKALLLLKKKRYQDQLLEKTENQISNLERMVQDIEFAQIEMKVIEGLKVGNDCLKKMHEVLSIEEVEKIMDETHDAIEYQKQIDEMLAGSLTQEDEEAVLAELEAITQGEADLELPEVPGE---------ELPEVPEQEPVREK 192          
BLAST of CK933068 vs. ExPASy Swiss-Prot
Match: CHM6A_XENLA (Charged multivesicular body protein 6-A OS=Xenopus laevis GN=chmp6-A PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 8.092e-24
Identity = 65/201 (32.34%), Postives = 109/201 (54.23%), Query Frame = 3
Query:  177 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLVVQEMPEVPTEG-PSEEQEKLDLPNVPTKVPVAS 770
            MGNLF +K   ++T+ D+A+L LK QR KL QYQ+++   ++ E++ A+ L+                         D  + N+E+ + DIE A  +  V E LK G   +K +   +++E+V+++MD+T+E   YQ +I+ +L   L+AEDEE IL E + +  + +  E+PE P+E  P    EK  + N P    +A+
Sbjct:    1 MGNLFARKRRSRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKAKLLLKKKRYQEQLLEKTDNQISNLEKMVEDIEFAQIEMKVIEGLKVGNECLKKMHEVMSIEEVERIMDETQEGIEYQRQIDEMLSGSLTAEDEEAILEELEAITQEDL--ELPEAPSEPLPDTIPEKQAVKNKPKPQMIAA 199          
BLAST of CK933068 vs. ExPASy Swiss-Prot
Match: CHM6B_XENLA (Charged multivesicular body protein 6-B OS=Xenopus laevis GN=chmp6-B PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 5.245e-23
Identity = 66/201 (32.84%), Postives = 110/201 (54.73%), Query Frame = 3
Query:  177 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLVVQEMPEVPTEGPSEE-QEKLDLPNVPTKVPVAS 770
            MGNLF +K   ++T+ D+A+L LK QR KL QYQ+++   ++ E++ A+ L+                         D  + N+E+ + DIE A  +  V E LK G   +K +   +++E+V+K+M++T+E   YQ +I+ +L   L+AEDEE IL E + +  + +  E+PE P+E  S+   EK  + N P    VA+
Sbjct:    1 MGNLFARKRRSRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKAKLLLKKKRYQEQLLEKTDNQISNLEKMVDDIEFAQIEMKVIEGLKVGNEWLKKMHEVMSIEEVEKIMEETQEGIEYQRQIDEMLSGSLTAEDEEAILEELEAITQEDL--ELPEAPSEPLSDTVPEKQAVKNRPKPQLVAA 199          
BLAST of CK933068 vs. ExPASy Swiss-Prot
Match: CHMP6_DICDI (Charged multivesicular body protein 6 OS=Dictyostelium discoideum GN=chmp6 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.400e-22
Identity = 65/182 (35.71%), Postives = 98/182 (53.85%), Query Frame = 3
Query:  195 KKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLVVQEMPEVPTEGPSEEQEKLDLP 740
            K+ KI+  DRA+L+LK QR KL  YQ Q+      E   A++                              L N+E+ +A++E A  Q  +FESLK G  ++K IQ E++LEDV+ LM++T EA  YQ++I+  L  K S E+E+++L E D +E QL  Q+ P+V    P  +  K++LP
Sbjct:   14 KEDKISKTDRAVLNLKIQRDKLKNYQTQV-----LEIAIAKECSKAGKKNQALLALKKKKYQEKMLDESFANLQNIEELIANVEQAEIQVRIFESLKQGNESLKEIQKEMSLEDVENLMEETAEAIQYQNDISEALSGKFSKEEEDDLLNELDEMEKQLNAQQYPKV----PETQLPKIELP 186          
BLAST of CK933068 vs. ExPASy Swiss-Prot
Match: CHMP6_CHICK (Charged multivesicular body protein 6 OS=Gallus gallus GN=CHMP6 PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 4.440e-22
Identity = 63/201 (31.34%), Postives = 107/201 (53.23%), Query Frame = 3
Query:  177 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLVVQEMPEVPTEG-PSEEQEKLDLPNVPTKVPVAS 770
            MGNLF +K   ++T+ D+A+L LK QR KL QYQ+++   +E E++ AR L+                         D  + N+E+ + DIE    +  V E LK G   +  +   +++E+V++++ +T++A  YQ +I+ IL   L+ EDE+ IL E + +  + +  E+P+VP+E  P E  E   + N P    VA+
Sbjct:    1 MGNLFGRKRRSRVTEQDKAVLQLKQQRDKLRQYQKRISLGLERERELARQLLKEGKKEKAMLLLKKKRYQEQLLDKTDNQISNLERMVQDIEFTQIEMKVIEGLKIGNECLNKMHQVMSIEEVERIIGETQDAVEYQRQIDEILAGSLTEEDEDAILEELNAITQEQL--ELPDVPSEPLPEEPPEATPVKNRPKPELVAA 199          
BLAST of CK933068 vs. ExPASy Swiss-Prot
Match: CHMP6_HUMAN (Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.436e-20
Identity = 60/201 (29.85%), Postives = 103/201 (51.24%), Query Frame = 3
Query:  177 MGNLFVKKP--KITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLVVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASR 773
            MGNLF +K   ++T+ D+AIL LK QR KL QYQ+++   +E E+  AR L+                         +  + ++E  +  IE    +  V E L+ G   +  +   +++E+V++++D+T+EA  YQ +I+ +L    + EDE+ IL E   +  + +  E+PEVP+E   E+        +P  VPV +R
Sbjct:    1 MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQI--ELPEVPSEPLPEK--------IPENVPVKAR 191          
BLAST of CK933068 vs. ExPASy Swiss-Prot
Match: CHMP6_PONAB (Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 3.182e-20
Identity = 60/201 (29.85%), Postives = 103/201 (51.24%), Query Frame = 3
Query:  177 MGNLFVKKP--KITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLVVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASR 773
            MGNLF +K   ++T+ D+AIL LK QR KL QYQ+++   +E E+  AR L+                         +  + ++E  +  IE    +  V E L+ G   +  +   +++E+V++++D+T+EA  YQ +I+ +L    + EDE+ IL E   +  + +  E+PEVP+E   E+        +P  VPV +R
Sbjct:    1 MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQI--ELPEVPSEPLPEK--------IPEDVPVKAR 191          
BLAST of CK933068 vs. ExPASy Swiss-Prot
Match: VPS20_SCHPO (Vacuolar protein sorting-associated protein 20 OS=Schizosaccharomyces pombe GN=vps20 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.063e-19
Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 3
Query:  192 VKKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLVVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVAS 770
            V   KI D DR+ILS+K QR KL +Y ++L+ + + E   AR  +                          G L N+EQ L+ IE    QK V   L+ GTN I+ +Q+++ LE V ++ +D +EA +Y DE+N +L  ++S + E+EI  E D+L  +   +++ ++   G +       LP+VP K  + S
Sbjct:    3 VNSSKINDKDRSILSIKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLYSGLITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDRDEAMSYVDEVNDMLQGRMSRDQEDEIQEELDSLIREQEDEKVKDLEKPGFTPSTGVDVLPSVPLKNAIPS 195          
The following BLAST results are available for this feature:
BLAST of CK933068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
VP202_ARATH2.481e-7374.87Vacuolar protein sorting-associated protein 20 hom... [more]
VP201_ARATH3.582e-7273.23Vacuolar protein sorting-associated protein 20 hom... [more]
CHMP6_DANRE8.646e-2633.83Charged multivesicular body protein 6 OS=Danio rer... [more]
CHM6A_XENLA8.092e-2432.34Charged multivesicular body protein 6-A OS=Xenopus... [more]
CHM6B_XENLA5.245e-2332.84Charged multivesicular body protein 6-B OS=Xenopus... [more]
CHMP6_DICDI3.400e-2235.71Charged multivesicular body protein 6 OS=Dictyoste... [more]
CHMP6_CHICK4.440e-2231.34Charged multivesicular body protein 6 OS=Gallus ga... [more]
CHMP6_HUMAN2.436e-2029.85Charged multivesicular body protein 6 OS=Homo sapi... [more]
CHMP6_PONAB3.182e-2029.85Charged multivesicular body protein 6 OS=Pongo abe... [more]
VPS20_SCHPO2.063e-1931.61Vacuolar protein sorting-associated protein 20 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933068 ID=CK933068; Name=CK933068; organism=Citrus sinensis; type=EST; length=790bp
GGGGGCTCACGCTCGCTGAAACTTTAACAAACAGAAACTAGAAAAGAATG
AGGGCGCTCTAGGACTGAAAAAAACCCATCCCCCCATTCTTTTCTTAATT
TAATTATCATATTTTATCGACATATTTGAAATTTCAACCATAATATACCT
AAGTTTTTTTTAAAAAAAATTGAAAGATGGGAAATTTGTTTGTGAAGAAA
CCGAAGATCACAGATGTGGATCGAGCGATTCTGTCTCTAAAGACCCAGCG
ACGCAAGCTAGCTCAGTATCAACAGCAGCTTGATGCTGTCATTGAAGCAG
AAAAGCAAGCTGCTAGAGACTTGATTCGTCAGAAGAGAAAGGATAGGGCG
TTGTTAGCATTGAAGAAGAAAAAAGCACAGGAAGAATTATTGAAACAGGT
TGATGGCTGGCTCATTAATGTTGAGCAACAATTGGCAGATATTGAATTAG
CGAGCAAGCAGAAAGCTGTATTTGAGAGTTTGAAGTCAGGTACTAATGCC
ATTAAGGCAATACAAAGTGAGATAAACCTGGAGGACGTTCAAAAGTTAAT
GGATGATACTGAAGAAGCTAAGGCTTATCAGGATGAAATTAATGCAATAT
TGGGTGAGAAATTATCAGCAGAAGATGAAGAGGAGATTTTGGCAGAATTT
GACAACTTGGAAGCTCAGCTTGTAGTTCAAGAAATGCCAGAAGTGCCAAC
TGAAGGACCATCCGAAGAACAAGAGAAGTTGGATCTTCCTAATGTTCCAA
CCAAAGTTCCTGTTGCTTCCCGTGTGGTTGCAGATGATGC
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