CK933069

Overview
NameCK933069
Unique NameCK933069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933069_ssr20 microsatellite CK933069_ssr20:20..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1522 contig Csv1_Contig1522:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933069 vs. ExPASy Swiss-Prot
Match: PR19A_ARATH (Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 8.487e-90
Identity = 163/211 (77.25%), Postives = 182/211 (86.26%), Query Frame = 1
Query:  154 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDGDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKRQVPPALAPIDALERYT 786
            MNC+ISGEVPEEPVVSK SGLL+EKRLI+ HI DYGKCPVTGEP T+DDIVPIKTGKIVKP+PL  ASIPG+LG FQ EWD LMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDE+R LLA++ERQ +PA     TSNAALSNGKR  +DG+ GP  KK+  GI+  +I ELTDCNAALSQQRKKRQ+P  LA +DALE++T
Sbjct:    1 MNCAISGEVPEEPVVSKKSGLLYEKRLIQTHISDYGKCPVTGEPHTLDDIVPIKTGKIVKPKPLHTASIPGLLGTFQTEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDESRQLLAEAERQ-LPAAPEVATSNAALSNGKRGIDDGEQGPNAKKMRLGISAEVITELTDCNAALSQQRKKRQIPKTLASVDALEKFT 210          
BLAST of CK933069 vs. ExPASy Swiss-Prot
Match: PR19B_ARATH (Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PRP19B PE=1 SV=3)

HSP 1 Score: 328.561 bits (841), Expect = 2.469e-89
Identity = 167/211 (79.15%), Postives = 182/211 (86.26%), Query Frame = 1
Query:  154 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDGDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKRQVPPALAPIDALERYT 786
            MNC+ISGEVP EPVVS  SGLLFE+RLIERHI DYGKCPVTGEPLT+DDIVPIKTG+I+KP+ L  ASIPG+LG FQNEWDGLMLSNFALEQQLHTARQELSHALYQHD+ACRVIARLKKERDEAR LLA+ ER I PA   AVT+NAALSNGKRA  D +LGP  KKL  GI+  II ELTDCNAALSQ+RKKRQ+P  LA ID LER+T
Sbjct:    1 MNCAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDIVPIKTGEIIKPKTLHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKKERDEARQLLAEVERHI-PAAPEAVTANAALSNGKRAAVDEELGPDAKKLCPGISAEIITELTDCNAALSQKRKKRQIPQTLASIDTLERFT 210          
BLAST of CK933069 vs. ExPASy Swiss-Prot
Match: PRP19_DICDI (Pre-mRNA-processing factor 19 homolog OS=Dictyostelium discoideum GN=prp19 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.563e-43
Identity = 97/210 (46.19%), Postives = 133/210 (63.33%), Query Frame = 1
Query:  154 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDGDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKRQVPPALAPIDALERY 783
            M C+ISG   EEPV+S  +G ++EKRLIE++I   GK P TGEPL + D++ +K GK VKPRP TA SIP ML +FQNEWD LML  F L+QQ  T RQEL+H++YQ+DAACRVIARL KERD ARS LA + R I+  +     +N   +N K         P+  + +  +   I   + + +  L + RK+R    +LA  DA++++
Sbjct:    1 MICAISGSTTEEPVISTKTGNVYEKRLIEKYIDTNGKEPTTGEPLGLSDLITVKIGKTVKPRPTTATSIPSMLQLFQNEWDSLMLETFTLKQQHETVRQELAHSMYQYDAACRVIARLVKERDAARSALANA-RNIVQQQQQQTNNNNNNNNNKDVEMSSASTPSSSEDNL-LDSTIYKRIAEKSEELIKTRKER-THQSLAEPDAIKQF 207          
BLAST of CK933069 vs. ExPASy Swiss-Prot
Match: PRP19_RAT (Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.344e-39
Identity = 96/211 (45.50%), Postives = 125/211 (59.24%), Query Frame = 1
Query:  160 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPED-GDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKR--QVPPALAPIDALERY 783
            CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE   AR  LA  + Q       AV S+     G   P D G+L         G+TP II +L D    L+ +RKKR   VP  L   + L +Y
Sbjct:    5 CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGEL--------VGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKY 207          
BLAST of CK933069 vs. ExPASy Swiss-Prot
Match: PRP19_MOUSE (Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.344e-39
Identity = 96/211 (45.50%), Postives = 125/211 (59.24%), Query Frame = 1
Query:  160 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPED-GDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKR--QVPPALAPIDALERY 783
            CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE   AR  LA  + Q       AV S+     G   P D G+L         G+TP II +L D    L+ +RKKR   VP  L   + L +Y
Sbjct:    5 CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGEL--------VGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKY 207          
BLAST of CK933069 vs. ExPASy Swiss-Prot
Match: PRP19_HUMAN (Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.344e-39
Identity = 96/211 (45.50%), Postives = 125/211 (59.24%), Query Frame = 1
Query:  160 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPED-GDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKR--QVPPALAPIDALERY 783
            CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE   AR  LA  + Q       AV S+     G   P D G+L         G+TP II +L D    L+ +RKKR   VP  L   + L +Y
Sbjct:    5 CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGEL--------VGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKY 207          
BLAST of CK933069 vs. ExPASy Swiss-Prot
Match: PRP19_BOVIN (Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.344e-39
Identity = 96/211 (45.50%), Postives = 125/211 (59.24%), Query Frame = 1
Query:  160 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPED-GDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKR--QVPPALAPIDALERY 783
            CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE   AR  LA  + Q       AV S+     G   P D G+L         G+TP II +L D    L+ +RKKR   VP  L   + L +Y
Sbjct:    5 CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGEL--------VGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKY 207          
BLAST of CK933069 vs. ExPASy Swiss-Prot
Match: PRP19_CHICK (Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.384e-38
Identity = 93/193 (48.19%), Postives = 117/193 (60.62%), Query Frame = 1
Query:  160 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDGDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKR 738
            CSIS EVPE P VS  S  ++E+RLIE++I + G  PV  +PL+ + ++ IK    ++PRP +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE   AR  LA  + Q       AV S+    N   A E  DLG        G+TP II +  D    L+ +RKKR
Sbjct:    5 CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLIDIKVAHPIRPRPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQ--PNVAGAGESMDLGEL-----AGMTPEIIQKPQDKATVLTTERKKR 190          
BLAST of CK933069 vs. ExPASy Swiss-Prot
Match: CWF8_SCHPO (Cell cycle control protein cwf8 OS=Schizosaccharomyces pombe GN=cwf8 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.973e-35
Identity = 84/209 (40.19%), Postives = 122/209 (58.37%), Query Frame = 1
Query:  154 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDGDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKRQVPPALAPIDALER 780
            M CSISGE P+EPV+S+ SG ++EKRLIE+ I +  K PVT +  T++D+VP+K    V+PRP +A S+P +L +FQ EWD + L  F L + L   +QELS ALY  DAA RVI+RL KERDEAR  LA+    I    S  +             ++ ++G +  +L T +   +     +    LS +RK+ ++ P  A  DA+ +
Sbjct:    1 MFCSISGETPKEPVISRVSGNVYEKRLIEQVIRETSKDPVTQQECTLEDLVPVKVPDFVRPRPPSATSLPALLSLFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAALRVISRLTKERDEAREALAKFSDNIGTVSSKTI-----------EVQEVEMGESDDQLKTSLRSTVEKTFQE----LSSKRKRTKLQPKWATDDAVSQ 194          
BLAST of CK933069 vs. ExPASy Swiss-Prot
Match: PRP19_CAEEL (Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 9.537e-33
Identity = 85/208 (40.87%), Postives = 126/208 (60.58%), Query Frame = 1
Query:  160 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK-PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDGDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKR--QVPPALAPIDAL 774
            C ISGE+ E+PVVS+ SG +F++RLI + I + G  P++   L+ D +V +K+G     PR ++  SIP +L M Q+EWD +ML++F+L QQL  ARQELSH+LYQHDAACRVI+RL KE   AR  L+     + P  S  V  + ++       ED            G++ AI+A+L + + +L+ +RK+R   +P  LA  + L
Sbjct:    5 CGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGTGSAPRNVSGTSIPSLLKMLQDEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISRLSKELTAAREALS----TLKPHTSAKVDDDVSIDES----ED----------QQGLSEAILAKLEEKSKSLTAERKQRGKNLPEGLAKTEEL 194          
The following BLAST results are available for this feature:
BLAST of CK933069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PR19A_ARATH8.487e-9077.25Pre-mRNA-processing factor 19 homolog 1 OS=Arabido... [more]
PR19B_ARATH2.469e-8979.15Pre-mRNA-processing factor 19 homolog 2 OS=Arabido... [more]
PRP19_DICDI4.563e-4346.19Pre-mRNA-processing factor 19 homolog OS=Dictyoste... [more]
PRP19_RAT2.344e-3945.50Pre-mRNA-processing factor 19 OS=Rattus norvegicus... [more]
PRP19_MOUSE2.344e-3945.50Pre-mRNA-processing factor 19 OS=Mus musculus GN=P... [more]
PRP19_HUMAN2.344e-3945.50Pre-mRNA-processing factor 19 OS=Homo sapiens GN=P... [more]
PRP19_BOVIN2.344e-3945.50Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRP... [more]
PRP19_CHICK3.384e-3848.19Pre-mRNA-processing factor 19 OS=Gallus gallus GN=... [more]
CWF8_SCHPO5.973e-3540.19Cell cycle control protein cwf8 OS=Schizosaccharom... [more]
PRP19_CAEEL9.537e-3340.87Pre-mRNA-processing factor 19 homolog OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_A09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933069 ID=CK933069; Name=CK933069; organism=Citrus sinensis; type=EST; length=786bp
GGGGCTCGCTCTCTCCCTTTCTCTCTCTCCTCTTTTCTCTTTACCCCTGC
TGCTCCGTCCATTCTACTCGCAAATCAAGTAGAAAAACTAAAGCAGCGTC
GTTTCGCTTCTCCGCAAGTCAACTGAAGCAACCAGTGCATTCTCACTGCC
ACAATGAATTGCTCAATCTCCGGCGAGGTGCCGGAAGAGCCTGTCGTTTC
GAAGAACTCAGGTTTACTCTTCGAGAAGCGCTTAATCGAGAGACACATAT
TGGATTATGGAAAATGTCCGGTTACAGGGGAACCACTTACTATGGATGAC
ATTGTTCCAATCAAAACAGGCAAGATTGTGAAGCCCAGACCATTGACAGC
TGCTAGCATTCCTGGGATGCTTGGAATGTTCCAGAATGAATGGGATGGTT
TGATGCTATCCAATTTTGCTTTGGAGCAACAACTTCATACGGCAAGGCAA
GAGCTAAGTCATGCATTGTACCAGCATGATGCTGCTTGTCGTGTGATTGC
TAGACTTAAAAAGGAAAGGGATGAAGCAAGGTCATTACTTGCGCAATCTG
AAAGACAGATAATGCCTGCAGAATCAACTGCAGTTACATCTAATGCTGCT
CTTAGCAATGGGAAAAGAGCCCCTGAGGATGGGGATTTGGGCCCTGCTGG
AAAGAAATTACATACTGGAATTACTCCTGCTATTATTGCTGAGCTGACAG
ACTGTAATGCGGCTCTTTCACAGCAGCGGAAAAAGCGGCAGGTTCCTCCA
GCTTTGGCTCCCATTGATGCTTTGGAGAGGTATACT
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