CK933073

Overview
NameCK933073
Unique NameCK933073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7547 contig Csv1_Contig7547:291..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933073 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.823e-35
Identity = 77/164 (46.95%), Postives = 111/164 (67.68%), Query Frame = 2
Query:    8 ALFAMENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFYITPFLEALK-MRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVEIQLEWIDI 496
            ++  M   +GL++V+V++G NLAVRDV++SDPYV++ +G+Q +KTRV+KNN+NP WNE L LSI +   P+K+ VYDKDTFS DD MG+AE  I P + A K      +     +     S+EN L  +  I+  DGK+ Q++ LRL+NVE G +EIQLE + +
Sbjct:  220 SMAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLGSWVASKENTLVSDGIILLEDGKVKQDISLRLQNVERGVLEIQLECLPL 383          
BLAST of CK933073 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.485e-33
Identity = 71/160 (44.38%), Postives = 109/160 (68.12%), Query Frame = 2
Query:   20 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFYITPFL-EALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVEIQLEWIDI 496
            M   +GLL+V + +G NLA+RD++SSDPYVV+ +GKQKL+T V+ +N+NP WN++L LS+ +S  P+KL VYD DTFS DD MG+A+  I P +  A+      +     + K   S +N L ++S I   DGK+ Q + ++L+NVE GE+E+++EW+ +
Sbjct:  175 MVEFIGLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSIINIVDGKVKQEVQIKLQNVESGELELEMEWLPL 334          
BLAST of CK933073 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.086e-31
Identity = 70/163 (42.94%), Postives = 108/163 (66.26%), Query Frame = 2
Query:   11 LFAMENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFYITPFL-EALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVEIQLEWIDI 496
            L  M   +GLL+V + +G N+A+RD++SSDPYVV+ +G+QK ++ VVK+N+NP WNE+L LS+  +   +KL V+D DTFS DD MG+AE  I P +  A+      +     + K   S +N L E+S I   DGK+ Q + ++L+NVE GE+E+++EW+ +
Sbjct:  173 LEGMVEFIGLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVESGELELEMEWLPL 335          
The following BLAST results are available for this feature:
BLAST of CK933073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AGD11_ARATH1.823e-3546.95Probable ADP-ribosylation factor GTPase-activating... [more]
AGD13_ARATH6.485e-3344.38Probable ADP-ribosylation factor GTPase-activating... [more]
AGD12_ARATH2.086e-3142.94ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004347_H03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933073 ID=CK933073; Name=CK933073; organism=Citrus sinensis; type=EST; length=735bp
GGGGATAGCGTTGTTTGCAATGGAGAATTTGATGGGTTTGCTCAGAGTTC
ATGTTCTGAGAGGAGTGAATCTTGCCGTCAGAGATGTCGTCAGCAGTGAT
CCTTATGTTGTGATCAAGATGGGAAAACAGAAGTTGAAGACTCGAGTTGT
GAAGAACAATGTCAATCCTGAGTGGAATGAAGATTTAACCCTCTCTATTT
CAGACTCTAATCTTCCAATCAAGCTTACAGTTTATGACAAAGACACATTC
AGTCCAGATGACAAAATGGGAGATGCAGAATTTTACATCACTCCATTTTT
GGAAGCTCTAAAGATGCGATTGGAAGGCCTCCCAAATGGAACCATTGTCA
CGAAAATACAGCCAAGCAGGGAGAACTGCCTTGCTGAAGAGAGCCACATT
GTCTGGACTGATGGTAAGCTTGTTCAAAACTTGTTTCTAAGACTTCGAAA
TGTTGAGGTGGGTGAAGTTGAAATCCAATTAGAGTGGATTGACATACCTG
GTTCCAGGGGCCTGTAGATGACATCTACGCACTCTCAGCTGCTAATAAGC
ATAGTGTACAAAAAAGTCTCTGAGCATCATTAACGGGCTCAGTTGGAGTT
TCTTCAATCAGTTCCTCTTATTCACATAAATATCTTGCTGCTTACCTTTT
GACTGGATTTTAATTATTAATGCTGTGCAAATATTTTGCTGCTTGCCTTT
TGACTAAAAAAAAAAAAAAAANNNNNAAAAAAAAA
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