CK933081

Overview
NameCK933081
Unique NameCK933081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933081_ssr81 microsatellite CK933081_ssr81:81..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_NEIMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup A GN=gatA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.295e-22
Identity = 59/152 (38.82%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNA 781
            L G+  A KD+F   G+ +   S     D+  +  TA VV  LL  G   +G+T +DEFA G T EN  YG   NP  P H+P             +L   ALG+DT G +R PAS CGI G +P++GTVS  G++  + S D  G +A+ A
Sbjct:   68 LTGIPVAYKDIFCQTGWRSACASK--MLDNFISPYTATVVQKLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTA 217          
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_NEIM0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup C (strain 053442) GN=gatA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.295e-22
Identity = 59/152 (38.82%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNA 781
            L G+  A KD+F   G+ +   S     D+  +  TA VV  LL  G   +G+T +DEFA G T EN  YG   NP  P H+P             +L   ALG+DT G +R PAS CGI G +P++GTVS  G++  + S D  G +A+ A
Sbjct:   68 LTGIPVAYKDIFCQTGWRSACASK--MLDNFISSYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGATKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTA 217          
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_NEIG2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria gonorrhoeae (strain NCCP11945) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.083e-21
Identity = 59/152 (38.82%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNA 781
            L G+  A KD+F   G+ +   S     D+  +  TA VV  LL  G   +G+T +DEFA G T EN  YG   NP  P H+P             +L   ALG+DT G +R PAS CGI G +P++GTVS  G++  + S D  G +A+ A
Sbjct:   68 LTGVPVAYKDIFCQTGWRSACASK--MLDNFVSPYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTA 217          
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_NEIMF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.415e-21
Identity = 59/152 (38.82%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNA 781
            L G+  A KD+F   G+ +   S     D+  +  TA VV  LL  G   +G+T +DEFA G T EN  YG   NP  P H+P             +L   ALG+DT G +R PAS CGI G +P++GTVS  G++  + S D  G +A+ A
Sbjct:   68 LTGVPVAYKDIFCQTGWRSACASK--MLDNFISPYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTA 217          
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_METHJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.415e-21
Identity = 61/162 (37.65%), Postives = 86/162 (53.09%), Query Frame = 2
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVL 811
            L+G+  A+KD    KG  T   S   K   +     A VVTLL   GA  +GKT +DEF  G T EN  YG  +NP     +P              LVD A+G+DT G +R PA+FCGI+G +P++G VS  G++  + SL+ +G +AR+   L  +  V+
Sbjct:   29 LSGVTVAVKDNISTKGIETTCASKILKG--YIPPYDAHVVTLLKNAGAAIVGKTNMDEFGMGTTTENSAYGPTLNPLDHQRVPGGSSGGSAAAVAAGLVDCAIGSDTGGSIRCPAAFCGIVGLKPTYGRVSRFGLIAYANSLEQIGPMARDVQTLSNLYSVI 188          
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_LEGPL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Lens) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.415e-21
Identity = 60/162 (37.04%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVL 811
            L G+  A+KD+F  K   T   S      + +A   A +VT   +NGA  IGKT +DEFA G + EN ++G+  NP     +P              LV FA+G+DT G +R PA+FCGI G +P++G VS  G++  + SLD  G  A++A  L  + H +
Sbjct:   67 LTGIPMALKDLFCTKRLNTTCASK--MLANFQAPYDATIVTKFKQNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGSLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCI 226          
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_LEGPC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Corby) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.415e-21
Identity = 60/162 (37.04%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVL 811
            L G+  A+KD+F  K   T   S      + +A   A +VT   +NGA  IGKT +DEFA G + EN ++G+  NP     +P              LV FA+G+DT G +R PA+FCGI G +P++G VS  G++  + SLD  G  A++A  L  + H +
Sbjct:   67 LTGIPMALKDLFCTKRLNTTCASK--MLANFQAPYDATIVTKFKQNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCI 226          
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_LEGPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Paris) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.415e-21
Identity = 60/162 (37.04%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVL 811
            L G+  A+KD+F  K   T   S      + +A   A +VT   +NGA  IGKT +DEFA G + EN ++G+  NP     +P              LV FA+G+DT G +R PA+FCGI G +P++G VS  G++  + SLD  G  A++A  L  + H +
Sbjct:   67 LTGIPMALKDLFCTKRLNTTCASK--MLANFQAPYDATIVTKFKQNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCI 226          
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_CHRSD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.415e-21
Identity = 63/153 (41.18%), Postives = 82/153 (53.59%), Query Frame = 2
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 784
            LAGL  A+KD+F  +G  T  GS     D   A   A VV  + + G   +GKT +DEFA G + EN  YG   NP   S +P              LV  ALGTDT G +R PA+FCGI G +P++G VS  G++  + SLD  G +AR A+
Sbjct:   68 LAGLPLALKDIFCTQGVRTSCGSK--MLDSFVAPYDATVVEKIRQAGGVSLGKTNMDEFAMGSSNENSFYGPVKNPWDLSAVPGGSSGGSAAAVAAGLVPAALGTDTGGSIRQPAAFCGITGLKPTYGRVSRYGMVAYASSLDQGGPMARTAA 218          
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_NEIG1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.152e-21
Identity = 59/152 (38.82%), Postives = 79/152 (51.97%), Query Frame = 2
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNA 781
            L G+  A KD+F   G+ +   S     D+     TA VV  LL  G   +G+T +DEFA G T EN  YG   NP  P H+P             +L   ALG+DT G +R PAS CGI G +P++GTVS  G++  + S D  G +A+ A
Sbjct:   68 LTGVPVAYKDIFCQTGWRSACASK--MLDNFIFPYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTA 217          
The following BLAST results are available for this feature:
BLAST of CK933081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_NEIMA8.295e-2238.82Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_NEIM08.295e-2238.82Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_NEIG21.083e-2138.82Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_NEIMF1.415e-2138.82Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_METHJ1.415e-2137.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LEGPL1.415e-2137.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEGPC1.415e-2137.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEGPA1.415e-2137.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_CHRSD1.415e-2141.18Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_NEIG13.152e-2138.82Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_A02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933081 ID=CK933081; Name=CK933081; organism=Citrus sinensis; type=EST; length=829bp
GCGGGGGCAGTCGATCGCCATTAAAACTANNNACGAAAACCTCCCTTAAA
CCCTTCACCTTTTCACATACCGTTTGTGTGTTATTATTATTATTTTTTCA
AATCGAACCATGTCAAAATCATTTAATATAATTAAAACCAATACATCGAA
CCCCAAAGTTTGGGTAGTGATCGGGGTGAGCGTGGTGGGTTTCGTGGTTC
TTGCGGAGACTCTGCGCCGTAGAAGGAATCTCAAATTGAATGGGAGAGTC
GATTTTGGTGCTTTTTTGGAAAGATTTGAACTCATTCCGTTCCCTCAGCC
GCCGCCTCCTGCTGCTCGGCAGCCTCTCGCCGGCCTCAAATTCGCCATCA
AGGACGTTTTTGATGTGAAGGGGTATGTAACGGGGTTTGGGAGTCCAGAC
TGGAAGAGAGATCACCATGAAGCCGAGAGGACGGCCGTGGTCGTTACTCT
TTTGTTGAAGAATGGAGCTACTTGTATTGGCAAGACTGTTTTAGATGAAT
TTGCATTTGGGATTACTGGGGAGAACAAGCATTATGGAACCCCTGTTAAT
CCCCAAATGCCCTCTCATATTCCTGGAGGTTCTTCTAGTGGTTCAGCTGT
GGCTGTTGCAGCTCAGCTTGTTGACTTTGCTCTTGGTACTGATACAATTG
GCTATGTGAGAGTTCCAGCATCATTTTGTGGGATCCTTGGTTACCGACCG
TCTCATGGCACTGTTTCCATGATTGGCGTGCTGCCAAATTCACAATCTCT
AGACACTGTTGGTTTGCTTGCTCGTAATGCATCTATTTTACATCGTGTTG
GGCATGTTTTACTTCAACTAAACACGGTG
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