CK933082

Overview
NameCK933082
Unique NameCK933082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13370 contig Csv1_Contig13370:77..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933082 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.151e-21
Identity = 61/120 (50.83%), Postives = 74/120 (61.67%), Query Frame = 3
Query:  282 VAHDSGYATGGNEL------SNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXX-PQGMEVIPHSQR-GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRM 617
            VAH S     G+EL        ++QLT+SFRGQVYVFD+V  DKV AV             PQ ME+        + +Y ++C+ PQRA SLDRFR+KR  RCF+KKVRY VRQEVALRM
Sbjct:   63 VAHRSD----GSELLVSRPPEGANQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRM 178          
BLAST of CK933082 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  321 LSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXXPQGMEVIPHSQR---GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRM 617
            + N  QLTLSF+GQVYVFD V+P+KVQAV                   PH      G++  P + + PQR ASL RFR+KRK R FDK +RY+VR+EVALRM
Sbjct:   74 IENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRM 175          
BLAST of CK933082 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.237e-17
Identity = 66/160 (41.25%), Postives = 84/160 (52.50%), Query Frame = 3
Query:  225 HLSYGPHSA--LENGIVVVEDVAHDS---GYATG---------GNELSN-----------SSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXX-PQGMEVIPHSQRGIADYPA---KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRM 617
            H+ +  H+   + NG  +V+D A D    G + G         GN   N             QLTLSF+GQVYVFDSV P+KVQAV             P G+   PH    ++  P    + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRM
Sbjct:   21 HVQFEHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGS-PHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRM 179          
The following BLAST results are available for this feature:
BLAST of CK933082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAT26_ARATH9.151e-2150.83GATA transcription factor 26 OS=Arabidopsis thalia... [more]
GAT27_ARATH9.470e-1850.00GATA transcription factor 27 OS=Arabidopsis thalia... [more]
GAT25_ARATH1.237e-1741.25GATA transcription factor 25 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004347_G04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933082 ID=CK933082; Name=CK933082; organism=Citrus sinensis; type=EST; length=619bp
TTTTTTTTTTTTTTAACTCTTTAACTTCTCTTTACACTTGGGGTTAGGGT
TTCACTCAAAATCTCCAAAAAGTTTTCCCTTTCGGTAATGCTTCGAAATC
CCCTTCATTCGGCCCAATATCACCTATGTACGGTCAGTCGCAGTCAATGA
ACATCTCCTCCCAAATGTCCGGTGGTGGTGCCGCCGCTGATGAAGACGAC
GTCTCTGTTGCCGCCGATGATCACCATCTCAGCTACGGCCCTCACTCGGC
CCTCGAAAACGGCATTGTCGTCGTCGAAGACGTTGCTCATGATTCCGGCT
ATGCTACCGGGGGCAACGAATTGTCTAATTCCAGCCAGCTCACTCTCTCC
TTTCGCGGCCAGGTCTATGTCTTTGATTCCGTCACGCCTGATAAGGTTCA
AGCGGTGCTGTTATTGTTGGGGGGATGCGAGTTATCTTCCAGTCCACAGG
GCATGGAAGTAATTCCTCACAGCCAGAGGGGTATTGCGGACTATCCTGCT
AAATGTACCCAACCACAAAGAGCAGCTTCATTAGATAGGTTTCGGCAGAA
GAGGAAAGAGCGTTGCTTTGATAAGAAAGTTAGATACAGTGTCCGGCAAG
AGGTTGCTCTCAGGATGCA
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