CK933084

Overview
NameCK933084
Unique NameCK933084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6379 contig Csv1_Contig6379:637..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_MOUSE (Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.788e-45
Identity = 85/126 (67.46%), Postives = 103/126 (81.75%), Query Frame = 2
Query:    5 HLKVRLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 382
            HL+V LKGQPP++DGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK +
Sbjct:  207 HLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332          
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_HUMAN (Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.439e-44
Identity = 86/126 (68.25%), Postives = 102/126 (80.95%), Query Frame = 2
Query:    5 HLKVRLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 382
            HL+V LKGQP IIDGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK +
Sbjct:  206 HLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 331          
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_RAT (Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.455e-44
Identity = 85/126 (67.46%), Postives = 102/126 (80.95%), Query Frame = 2
Query:    5 HLKVRLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 382
            HL+V LKGQ P+IDGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK +
Sbjct:  207 HLRVGLKGQAPVIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332          
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_BOVIN (Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.188e-44
Identity = 84/126 (66.67%), Postives = 102/126 (80.95%), Query Frame = 2
Query:    5 HLKVRLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 382
            HL+V LKGQP I+DGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+A+ +
Sbjct:  207 HLRVGLKGQPAIVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKARFN 332          
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_CHICK (Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.219e-43
Identity = 84/125 (67.20%), Postives = 101/125 (80.80%), Query Frame = 2
Query:    8 LKVRLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 382
            L+V LKG PP+IDGEL   VK ++  W IED KTV++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQ+ILKKFM +HPEMDFS+AK +
Sbjct:  217 LRVGLKGHPPVIDGELFNEVKVEESSWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQDILKKFMEQHPEMDFSKAKFN 341          
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_EMENI (Nuclear movement protein nudC OS=Emericella nidulans GN=nudC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.131e-34
Identity = 73/131 (55.73%), Postives = 90/131 (68.70%), Query Frame = 2
Query:    8 LKVRLKGQ--PPIIDGELHMAVKPDDCYWSIEDQ-----KTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKI 379
            +KV++KG+     IDG+    +KP +  W++E       K VSI L K NQMEWW  ++   P+ID  K+ PENS LSDLD ETR+ VEKMM+DQRQK MG PTSDE +K +ILKKF  EHPEMDFS AKI
Sbjct:   67 IKVKVKGENGEVFIDGQFPHPIKPSESSWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAMVEKMMYDQRQKEMGAPTSDEQRKMDILKKFQKEHPEMDFSNAKI 197          
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_DICDI (Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.545e-30
Identity = 63/127 (49.61%), Postives = 86/127 (67.72%), Query Frame = 2
Query:    5 HLKVR-LKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 382
            HL V+ L     IIDG+L+  VK  DC W++E  K + I L K    EWW C+I+G  EID  +++P+NS LSD D ETR+ VEKM+++Q +K+ GLPT+DE +KQ I + F  EHP+MDFS AK +
Sbjct:   45 HLTVKNLITNDTIIDGKLYKNVKKSDCNWTLESGKNLEIELFKLKGQEWWSCIIQGESEIDVTQIKPQNSSLSDFDGETRAMVEKMLYNQNRKAQGLPTTDEEEKQRIFETFKNEHPDMDFSNAKFN 171          
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_SCHPO (Nuclear movement protein nudc OS=Schizosaccharomyces pombe GN=nudc PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 2
Query:    8 LKVRLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAK 376
            +++ +  +  ++ G L   +  D+  W++E+Q+ + I L K N+MEWW C+IKG P ID   +EPENSKLSDLD ETR+TVEKMM +Q QK      +DE +++++L+ FM +HPE+DFS  +
Sbjct:   46 IQINVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMMLEQSQK-----RTDEQKRKDVLQNFMKQHPELDFSNVR 163          
The following BLAST results are available for this feature:
BLAST of CK933084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NUDC_MOUSE3.788e-4567.46Nuclear migration protein nudC OS=Mus musculus GN=... [more]
NUDC_HUMAN1.439e-4468.25Nuclear migration protein nudC OS=Homo sapiens GN=... [more]
NUDC_RAT2.455e-4467.46Nuclear migration protein nudC OS=Rattus norvegicu... [more]
NUDC_BOVIN4.188e-4466.67Nuclear migration protein nudC OS=Bos taurus GN=NU... [more]
NUDC_CHICK1.219e-4367.20Nuclear migration protein nudC OS=Gallus gallus GN... [more]
NUDC_EMENI5.131e-3455.73Nuclear movement protein nudC OS=Emericella nidula... [more]
NUDC_DICDI1.545e-3049.61Nuclear movement protein nudC OS=Dictyostelium dis... [more]
NUDC_SCHPO7.177e-2844.72Nuclear movement protein nudc OS=Schizosaccharomyc... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004347_G07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933084 ID=CK933084; Name=CK933084; organism=Citrus sinensis; type=EST; length=592bp
GGGCCATCTTAAAGTCCGTCTCAAGGGGCAGCCTCCCATAATTGATGGGG
AGCTTCATATGGCCGTTAAGCCTGATGATTGTTATTGGAGCATAGAGGAC
CAGAAAACTGTTTCTATTCTTTTGACCAAGCAGAATCAGATGGAGTGGTG
GAAATGTCTGATAAAAGGAGGCCCTGAAATTGACACTCAGAAAGTTGAAC
CTGAGAACAGTAAATTATCTGACCTGGATCCAGAGACTAGGTCGACTGTT
GAAAAGATGATGTTTGACCAGAGGCAAAAGTCCATGGGCCTGCCGACTAG
CGACGAGATGCAGAAACAGGAGATTTTGAAGAAATTCATGGCTGAGCATC
CAGAGATGGACTTCTCAAGAGCCAAGATCTCATAAATAGAGTCTCCTTAT
TAGGATGTGCAGTAGATGCACGTCAAAAGTTTCTAGTGGATTTCGAGTTT
TGTTTTGCAGCCCCGCAAGCTTCTTATTAGATGTTTGAATTTTGTTTATA
TTTGTTAACAAGGATTGGACAATTGCTATCTATTTAGCATGGTGCGAGTC
GATGCCTTCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top