CK933084
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_MOUSE (Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 3.788e-45 Identity = 85/126 (67.46%), Postives = 103/126 (81.75%), Query Frame = 2 Query: 5 HLKVRLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 382 HL+V LKGQPP++DGEL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK + Sbjct: 207 HLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_HUMAN (Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.439e-44 Identity = 86/126 (68.25%), Postives = 102/126 (80.95%), Query Frame = 2 Query: 5 HLKVRLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 382 HL+V LKGQP IIDGEL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK + Sbjct: 206 HLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 331
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_RAT (Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 2.455e-44 Identity = 85/126 (67.46%), Postives = 102/126 (80.95%), Query Frame = 2 Query: 5 HLKVRLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 382 HL+V LKGQ P+IDGEL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK + Sbjct: 207 HLRVGLKGQAPVIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_BOVIN (Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 4.188e-44 Identity = 84/126 (66.67%), Postives = 102/126 (80.95%), Query Frame = 2 Query: 5 HLKVRLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 382 HL+V LKGQP I+DGEL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+A+ + Sbjct: 207 HLRVGLKGQPAIVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKARFN 332
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_CHICK (Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.219e-43 Identity = 84/125 (67.20%), Postives = 101/125 (80.80%), Query Frame = 2 Query: 8 LKVRLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 382 L+V LKG PP+IDGEL VK ++ W IED KTV++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQ+ILKKFM +HPEMDFS+AK + Sbjct: 217 LRVGLKGHPPVIDGELFNEVKVEESSWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQDILKKFMEQHPEMDFSKAKFN 341
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_EMENI (Nuclear movement protein nudC OS=Emericella nidulans GN=nudC PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 5.131e-34 Identity = 73/131 (55.73%), Postives = 90/131 (68.70%), Query Frame = 2 Query: 8 LKVRLKGQ--PPIIDGELHMAVKPDDCYWSIEDQ-----KTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKI 379 +KV++KG+ IDG+ +KP + W++E K VSI L K NQMEWW ++ P+ID K+ PENS LSDLD ETR+ VEKMM+DQRQK MG PTSDE +K +ILKKF EHPEMDFS AKI Sbjct: 67 IKVKVKGENGEVFIDGQFPHPIKPSESSWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAMVEKMMYDQRQKEMGAPTSDEQRKMDILKKFQKEHPEMDFSNAKI 197
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_DICDI (Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.545e-30 Identity = 63/127 (49.61%), Postives = 86/127 (67.72%), Query Frame = 2 Query: 5 HLKVR-LKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 382 HL V+ L IIDG+L+ VK DC W++E K + I L K EWW C+I+G EID +++P+NS LSD D ETR+ VEKM+++Q +K+ GLPT+DE +KQ I + F EHP+MDFS AK + Sbjct: 45 HLTVKNLITNDTIIDGKLYKNVKKSDCNWTLESGKNLEIELFKLKGQEWWSCIIQGESEIDVTQIKPQNSSLSDFDGETRAMVEKMLYNQNRKAQGLPTTDEEEKQRIFETFKNEHPDMDFSNAKFN 171
BLAST of CK933084 vs. ExPASy Swiss-Prot
Match: NUDC_SCHPO (Nuclear movement protein nudc OS=Schizosaccharomyces pombe GN=nudc PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28 Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 2 Query: 8 LKVRLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAK 376 +++ + + ++ G L + D+ W++E+Q+ + I L K N+MEWW C+IKG P ID +EPENSKLSDLD ETR+TVEKMM +Q QK +DE +++++L+ FM +HPE+DFS + Sbjct: 46 IQINVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMMLEQSQK-----RTDEQKRKDVLQNFMKQHPELDFSNVR 163 The following BLAST results are available for this feature:
BLAST of CK933084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK933084 ID=CK933084; Name=CK933084; organism=Citrus sinensis; type=EST; length=592bpback to top |