CK933098

Overview
NameCK933098
Unique NameCK933098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1527 contig Csv1_Contig1527:1..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: TCP11_ARATH (Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.681e-29
Identity = 70/142 (49.30%), Postives = 82/142 (57.75%), Query Frame = 2
Query:  239 TKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSQGMFLAADAEPQ----PNCRLDLCQPLGLQFAGNGYRHIPFTALLLQP 652
            TKDRHTKVNGR RRV MP L AARIFQLTRELGH+++GETIEWLL QAEPSII                                       SS     +   + Q    P+CRLDLCQP+G+Q+  NGY H+PFTA+LL+P
Sbjct:   43 TKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATGYGTKLISNWVDVAADDS------------------SSSSSMTSPQTQTQTPQSPSCRLDLCQPIGIQYPVNGYSHMPFTAMLLEP 166          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.498e-21
Identity = 46/53 (86.79%), Postives = 52/53 (98.11%), Query Frame = 2
Query:  239 TKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            TKDRHTKV+GRGRR+RMP LCAAR+FQLTRELGH+SDGETIEWLL+QAEPS+I
Sbjct:  117 TKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVI 169          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: TCP8_ARATH (Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 45/53 (84.91%), Postives = 52/53 (98.11%), Query Frame = 2
Query:  239 TKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            TKDRHTKV+GRGRR+RMP LCAAR+FQLTRELGH+SDGETIEWLL+QAEP+I+
Sbjct:   60 TKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIV 112          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: TCP22_ARATH (Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 45/53 (84.91%), Postives = 52/53 (98.11%), Query Frame = 2
Query:  239 TKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            TKDRHTKV+GRGRR+RMP +CAAR+FQLTRELGH+SDGETIEWLL+QAEP+II
Sbjct:   63 TKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAII 115          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.437e-21
Identity = 44/53 (83.02%), Postives = 51/53 (96.23%), Query Frame = 2
Query:  239 TKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            TKDRHTKV GRGRR+RMP +CAAR+FQLTRELGH+SDGETIEWLL+QAEP++I
Sbjct:   52 TKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVI 104          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 2
Query:  242 KDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            KDRHTKV GRGRR+RMP LCAARIFQLTRELGH+SDGETI+WLL+QAEPSII
Sbjct:   79 KDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSII 130          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: PCF3_ORYSJ (Transcription factor PCF3 OS=Oryza sativa subsp. japonica GN=PCF3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 44/53 (83.02%), Postives = 51/53 (96.23%), Query Frame = 2
Query:  239 TKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            TKDRHTKV GRGRR+RMP LCAAR+FQLTRELGH++DGETIEWLL+QAEP+I+
Sbjct:  152 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIV 204          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: TCP21_ARATH (Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20
Identity = 44/53 (83.02%), Postives = 52/53 (98.11%), Query Frame = 2
Query:  239 TKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            +KDRH+KV+GRGRR+RMP +CAAR+FQLTRELGH+SDG+TIEWLLRQAEPSII
Sbjct:   31 SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSII 83          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: TCP7_ARATH (Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.826e-20
Identity = 44/52 (84.62%), Postives = 51/52 (98.08%), Query Frame = 2
Query:  242 KDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            KDRH+KV+GRGRR+RMP +CAAR+FQLTRELGH+SDG+TIEWLLRQAEPSII
Sbjct:   40 KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSII 91          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: TCP9_ARATH (Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 2
Query:  137 PKSQPQLSNTYNY*VSSQN*TRHPRKRXXXXXXXTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            PK++P + + ++  ++  + T  P KR       TKDRHTKV GRGRR+RMP  CAARIFQLTRELGH+SDGETI WLL  AEP+II
Sbjct:   47 PKAEPVMPS-FSMSLAPPSSTGPPLKRAS-----TKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAII 127          
The following BLAST results are available for this feature:
BLAST of CK933098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TCP11_ARATH5.681e-2949.30Transcription factor TCP11 OS=Arabidopsis thaliana... [more]
TCP14_ARATH1.498e-2186.79Transcription factor TCP14 OS=Arabidopsis thaliana... [more]
TCP8_ARATH3.338e-2184.91Transcription factor TCP8 OS=Arabidopsis thaliana ... [more]
TCP22_ARATH4.360e-2184.91Transcription factor TCP22 OS=Arabidopsis thaliana... [more]
TCP15_ARATH7.437e-2183.02Transcription factor TCP15 OS=Arabidopsis thaliana... [more]
TCP20_ARATH9.713e-2188.46Transcription factor TCP20 OS=Arabidopsis thaliana... [more]
PCF3_ORYSJ9.713e-2183.02Transcription factor PCF3 OS=Oryza sativa subsp. j... [more]
TCP21_ARATH2.164e-2083.02Transcription factor TCP21 OS=Arabidopsis thaliana... [more]
TCP7_ARATH2.826e-2084.62Transcription factor TCP7 OS=Arabidopsis thaliana ... [more]
TCP9_ARATH6.296e-2058.62Transcription factor TCP9 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_G03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933098 ID=CK933098; Name=CK933098; organism=Citrus sinensis; type=EST; length=734bp
GCGGGGGTCTCCACAAACCCTTTATCCTCNNNTGTAATTTCTCAAAAAAC
CCTCAATTTCTTTTTCTTTTTTAACCTTTTTTAAACCCCTGAAACAAAAC
TATCTACATGGCCTCAGAAATGGCATTGCAGACCCACCAAAATCCCAACC
CCAACTCAGTAACACCTACAACTACTGAGTCAGCAGCCAAAACTGAACTC
GCCACCCACGAAAACGTAGCAGTTCTTCGTCATCATCGACGAAGGACCGT
CACACCAAGGTCAACGGCCGGGGCCGCCGTGTACGGATGCCGCCTCTCTG
CGCGGCCCGGATCTTCCAGCTGACGAGGGAGCTCGGCCACCGATCAGACG
GCGAGACCATCGAGTGGCTGCTCCGGCAGGCCGAGCCCTCCATCATAGCC
GCAACCGGCACAGGCACCGTTCCCGCTGTGGCTGTATCCTCATCCACCGC
GGGGCCCACTCCCATGTCGTCGTCCCCGCCTTCGTTGTCGTGCTGCGTGC
AGCCTCTGAGCGTTTCGTCGCAGGGGATGTTCTTGGCTGCTGACGCGGAG
CCGCAGCCCAACTGCCGTCTCGACTTGTGCCAGCCGTTGGGGCTGCAGTT
CGCGGGAAATGGGTACCGCCACATACCGTTCACAGCGCTGTTACTGCAGC
CGGCAGTTGCGGCTGTGGCCGCCGCGGCGGAGGAGGCGGAAGAGAGTGGG
GGGCAAGAGGATATCAAGGTGACTGGGGATTGTC
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