CK933106

Overview
NameCK933106
Unique NameCK933106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933106_ssr354 microsatellite CK933106_ssr354:354..365. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933106_ssr373 microsatellite CK933106_ssr373:373..384. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12293 contig Csv1_Contig12293:9..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.881e-66
Identity = 131/223 (58.74%), Postives = 152/223 (68.16%), Query Frame = 2
Query:   80 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            MA+TFSDLHTE G+KS++++L+GK+YISG+QL+ DD+KVYAAV VKP+D+FPNAS WY+SV+S+LA SFPGKAVGV+                                                            VL+DVKPWDDETDMKKLEEAVR VEMPGLFWGASKLVPVGYGIKKL IM TIVDDLVS D+LIE+ LT+EP NEYIQSCDIVAFNK
Sbjct:    1 MAVTFSDLHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVASQLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNK 223          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 243.047 bits (619), Expect = 1.258e-63
Identity = 128/223 (57.40%), Postives = 146/223 (65.47%), Query Frame = 2
Query:   80 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            MA+TF+DLHT  GLK+L+Q+LSGK+Y+SGN ++KDDIKV+AAV  KP   FPNA+ WYD+V++ LA  FPGKAVGV                                                             VLLDVKPWDDETDMKKLEEAVRSV+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIEEHLT EP NE++QSCDIVAFNK
Sbjct:    1 MAVTFTDLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAADERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNK 223          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.642e-37
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            VL+D+KPWDDETDMKKLEEAVRS++M GLFWGASKLVPVGYGIKKL IM TIVDDLVS+D++IEE LT EP NEY+QSCDIVAFNK
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNK 230          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.451e-37
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            VL+D+KPWDDETDMKKLEEAV+S++M GLFWGASKLVPVGYGIKKLQI+ TIVDDLVS+D++IEE LT EP NEY+QSCDIVAFNK
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNK 230          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.451e-37
Identity = 76/86 (88.37%), Postives = 82/86 (95.35%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            VLL+VKPWDDETDMKKLEEAVRSV+MPGL WGASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE+HLT+EP NEYIQS DIVAFNK
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNK 227          

HSP 2 Score: 120.168 bits (300), Expect = 1.230e-26
Identity = 56/77 (72.73%), Postives = 67/77 (87.01%), Query Frame = 2
Query:   80 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVR 310
            MA+TFSDLHTE GLK+L+++L+GK+YISG+QL+ DD+KVYAAVL  P D FPNAS WYDSV+S LA SFPGKA GVR
Sbjct:    1 MAVTFSDLHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVR 77          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 7.687e-37
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            VLLDVKPWDDETDM KLEEAVRS++M GL WGASKLV VGYGIKKLQIM+TIVDDLVSVD L+E++LTAEP NEYIQSCDIVAFNK
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNK 225          

HSP 2 Score: 70.4774 bits (171), Expect = 1.118e-11
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 2
Query:   80 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRL 274
            MA+TF DL +E+GL+ LD+YL  +SYISG Q +KDD+ V+AA+   P+  + N S WY+ V + L
Sbjct:    1 MAVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEALL 65          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.921e-36
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NEYIQSCDIVAFNK
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNK 228          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 8.499e-36
Identity = 73/86 (84.88%), Postives = 79/86 (91.86%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NE+IQSCDIVAFNK
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNK 225          

HSP 2 Score: 68.9366 bits (167), Expect = 3.252e-11
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 2
Query:   80 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPS 283
            MAIT S++++E+GL+ LD+YL  +SYISG Q +KDD+ V+ ++   PA S+ N + WYD +S+ L  S
Sbjct:    1 MAITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSS 68          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 4.218e-35
Identity = 73/86 (84.88%), Postives = 79/86 (91.86%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            VLLDVKPWDDETDMKKLEEAVRSV+  GL  GASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE++LT EP NEY+QSCDIVAFNK
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNK 230          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.270e-31
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            VL+D+KPWDDETDMKKLEEAVRSV+M GL WGASKL+PVGYGIKKLQIM+TI+DDL S    IEE L   P NEY+QSCDIVAFNK
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQSCDIVAFNK 215          

HSP 2 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 45/76 (59.21%), Postives = 64/76 (84.21%), Query Frame = 2
Query:   80 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGV 307
            MA+TFSDLHT  GLK+L+ +L+GK+YISG+ +TKDD+KV+AAV +KP+  FPNA+ WYD+V++ ++  FPG+A GV
Sbjct:    1 MAVTFSDLHTADGLKALEAHLAGKTYISGDGITKDDVKVFAAVPLKPSAEFPNAARWYDTVAAAVSSRFPGQASGV 76          
The following BLAST results are available for this feature:
BLAST of CK933106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B2_ARATH7.881e-6658.74Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_ORYSJ1.258e-6357.40Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1D2_ARATH2.642e-3783.72Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH3.451e-3782.56Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1B1_ARATH3.451e-3788.37Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D_PIMBR7.687e-3786.05Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D1_ORYSJ2.921e-3686.05Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ8.499e-3684.88Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_BETVU4.218e-3584.88Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B_WHEAT1.270e-3177.91Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_F06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933106 ID=CK933106; Name=CK933106; organism=Citrus sinensis; type=EST; length=750bp
GGGGGCAAAAGTAGGCAGTTATTATCCTGTGTTGAAGTTGTGCGTCTNTN
CTTGCCTCTGCCTTGATTTGAAGACCAAAATGGCCATCACTTTTTCGGAT
CTCCACACAGAGTCAGGCCTTAAGTCTCTCGATCAGTATCTTTCTGGGAA
ATCTTATATCTCCGGTAATCAACTGACAAAAGATGACATCAAGGTCTACG
CTGCCGTTTTGGTGAAACCTGCTGATTCTTTCCCCAACGCCAGCAGCTGG
TACGACAGCGTTTCTTCACGTCTCGCCCCAAGCTTCCCTGGCAAAGCCGT
TGGTGTGAGAGTTGATGGCAAAGGTGCTCCAGTTGACGCCGCCGCAGCCA
AGCCTGCTGCTGCTGGAGGTGGTGATGATGATGATTTGGATCTCTTTGGA
GATGAGACTGAGGAGGATAAGAAAGCAGCAGAGGAGAGGGAGGCTGCTAA
AAAGCAATCATCCAAGAAGAAAGAGAGTGGAAAATCATCGGTACTTTTGG
ATGTAAAGCCTTGGGATGACGAGACAGACATGAAAAAGCTAGAAGAGGCA
GTTAGGAGTGTTGAGATGCCGGGTCTCTTTTGGGGAGCATCAAAATTGGT
CCCAGTCGGTTATGGGATTAAGAAGCTGCAAATCATGATTACAATCGTTG
ACGATCTTGTTTCTGTGGATTCACTGATAGAGGAACACCTCACAGCTGAG
CCCTGCAATGAGTATATTCAGAGCTGCGACATCGTCGCCTTCAATAAAAT
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