CK933111

Overview
NameCK933111
Unique NameCK933111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1278 contig Csv1_Contig1278:196..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK933111 vs. ExPASy Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.525e-23
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 3 
Query:    6 TAMSMKQHKKDIAAEAVKKKRRATKKPYSRSVVGATLEVIQKRRTEKPEVRDAAREAAL 182
            TAM  KQHKKDIA EAVKK+RR TKKPYSRS+VGATLEVIQKRRTEKPEVRDAAREAAL
Sbjct:   54 TAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 112

HSP 2 Score: 23.8682 bits (50), Expect = 5.525e-23
Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  290 GCRPEGPQARRWWWKAVN 343
            G +P+GP+   W W+A++
Sbjct:  149 GAQPKGPKLGGWRWQALS 166
[Close]
BLAST of CK933111 vs. ExPASy Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.854e-22
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 3 
Query:    6 TAMSMKQHKKDIAAEAVKKKRRATKKPYSRSVVGATLEVIQKRRTEKPEVRDAAREAAL 182
            TAM  KQHKKD A EAVKK+RRATKKPYSRS+VGATLEVIQK+RTEKPEVRDAAREAAL
Sbjct:   54 TAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAAL 112
[Close]
BLAST of CK933111 vs. ExPASy Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 5.802e-21
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 3 
Query:    6 TAMSMKQHKKDIAAEAVKKKRRATKKPYSRSVVGATLEVIQKRRTEKPEVRDAAREAAL 182
            TAM  KQHKKD A EAVK++RRATKKPYSRS+VGATLEVIQK+R EKPEVRDAAREAAL
Sbjct:   54 TAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112
[Close]
BLAST of CK933111 vs. ExPASy Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 5.802e-21
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 3 
Query:    6 TAMSMKQHKKDIAAEAVKKKRRATKKPYSRSVVGATLEVIQKRRTEKPEVRDAAREAAL 182
            TAM  KQHKKD A EAVK++RRATKKPYSRS+VGATLEVIQK+R EKPEVRDAAREAAL
Sbjct:   54 TAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112
[Close]
BLAST of CK933111 vs. ExPASy Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.578e-21
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 3 
Query:    6 TAMSMKQHKKDIAAEAVKKKRRATKKPYSRSVVGATLEVIQKRRTEKPEVRDAAREAAL 182
            TAM  KQHKKDI AEA KK+RR TKKPYSRS+VGATLEVIQK+R EKPEVRDAAREAAL
Sbjct:   54 TAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112
The following BLAST results are available for this feature:
BLAST of CK933111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL24_PRUAV5.525e-2389.8360S ribosomal protein L24 OS=Prunus avium GN=RPL24... [more]
RL24_CICAR6.854e-2288.1460S ribosomal protein L24 OS=Cicer arietinum GN=RP... [more]
RL242_ARATH5.802e-2184.7560S ribosomal protein L24-2 OS=Arabidopsis thalian... [more]
RL241_ARATH5.802e-2184.7560S ribosomal protein L24-1 OS=Arabidopsis thalian... [more]
RL24_HORVU7.578e-2184.7560S ribosomal protein L24 OS=Hordeum vulgare GN=RP... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004347_E02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933111 ID=CK933111; Name=CK933111; organism=Citrus sinensis; type=EST; length=500bp
GGGGGACAGCCATGTCCATGAAACAGCACAAGAAGGACATTGCTGCTGAG
GCAGTTAAGAAGAAGCGTCGTGCCACTAAGAAGCCCTATTCAAGATCTGT
AGTTGGTGCCACCTTGGAAGTTATCCAGAAGAGAAGAACTGAGAAGCCAG
AAGTCCGAGATGCTGCACGGGAGGCTGCACTTCGTGAAATTAAGGAGAGG
ATCAAGAAGACTAAGGATGAAAAGAAGGCAAAGAAAGCGGAGACGATGTC
CAAGTCACAGAAGTCTCAAGTCAAAAGTAGCGTGCCTAAGGGTGCCGCCC
CGAAGGGCCCCAAGCTAGGCGGTGGTGGTGGAAAGCGGTGAATTGCTTAG
TCTTTTCAAATCTGCAGATGAGTATAAACAATTAGAACTTAATTTCATGT
TTCTTGTATGGATTGATCAATCATGTAGACCAGATTTTTTTGTGGTTTTT
GTTTATGGTTTTGCATTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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