CK933117

Overview
NameCK933117
Unique NameCK933117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933117 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.210e-57
Identity = 97/111 (87.39%), Postives = 108/111 (97.30%), Query Frame = 1
Query:   97 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 429
            M RAPCCEKMGLKKGPWTPEED++L+ +++ +GHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNF++EEEDTII+LHE+LGNRWSAIAARLPGRTDNEIKNVWHTH
Sbjct:    1 MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTH 111          
BLAST of CK933117 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.127e-48
Identity = 84/109 (77.06%), Postives = 95/109 (87.16%), Query Frame = 1
Query:  103 RAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 429
            RAPCC K+GL +G WTP+ED  LI Y++ +GH NWRALPKQAGLLRCGKSCRLRWINYLRPD+KRGNFT EEE+ II LH +LGN+WS IAA LPGRTDNEIKNVW+TH
Sbjct:    5 RAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTH 113          
BLAST of CK933117 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.344e-46
Identity = 86/152 (56.58%), Postives = 107/152 (70.39%), Query Frame = 1
Query:   82 CGGPKMVR---APCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXXXXEPVINNHSNANHVTARSEICSG 528
            CGG K V     PCC KMG+K+GPWT EED+IL++++K  G G WR+LPK+AGLLRCGKSCRLRW+NYLRP +KRG  T +EED I+ LH +LGNRWS IA R+PGRTDNEIKN W+TH           +P  +   +AN++    E  SG
Sbjct:    4 CGGKKPVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH-LRKKLLRQGIDPQTHKPLDANNIHKPEEEVSG 154          
BLAST of CK933117 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.712e-46
Identity = 80/111 (72.07%), Postives = 93/111 (83.78%), Query Frame = 1
Query:   97 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 429
            M R PCCEK+GLK+G WT EEDQ+L NY+  +G G+WR+LPK AGLLRCGKSCRLRWINYLR D+KRGN ++EEED II LH  LGNRWS IA+ LPGRTDNEIKN W++H
Sbjct:    1 MGRTPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSH 111          
BLAST of CK933117 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.535e-45
Identity = 80/111 (72.07%), Postives = 91/111 (81.98%), Query Frame = 1
Query:   97 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 429
            M R+PCCEK    KG WT EEDQ LINY++ +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT EE++ II LH +LGN+WS IA  LPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTH 111          
BLAST of CK933117 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.647e-45
Identity = 79/111 (71.17%), Postives = 91/111 (81.98%), Query Frame = 1
Query:   97 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 429
            M R+PCCEK    KG WT EED+ L+ Y+K +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT EE++ II LH +LGN+WS IA RLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111          
BLAST of CK933117 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.376e-45
Identity = 88/168 (52.38%), Postives = 110/168 (65.48%), Query Frame = 1
Query:   97 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXXXXEPVINNHSNANHVTARSEICSGASTPDRQTRLLLQATCRPSPPPRL 600
            M RAPCCEK+G+K+G WT EEDQIL NY++  G G+WR+LPK AGL RCGKSCRLRWINYLR D+KRGN T EEE+ ++ LH  LGNRWS IA  LPGRTDNEIKN W++H              I   S +  V+A     + ++ P  Q +  L  T R +  P++
Sbjct:    1 MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSH------LSRKLHNFIRKPSISQDVSAVIMTNASSAPPPPQAKRRLGRTSRSAMKPKI 162          
BLAST of CK933117 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.633e-45
Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = 1
Query:   97 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 429
            M R+PCCEK  + KG WT EEDQ+L++Y++ +G G WR+LP+ AGL RCGKSCRLRW+NYLRPD+KRGNFT EE++ II LH +LGN+WS IA RLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111          
BLAST of CK933117 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.258e-44
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 1
Query:   97 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 429
            M R+PCCEK    +G WT EED+ L+ Y++ +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT +E+D I+ LH +LGN+WS IAARLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTH 111          
BLAST of CK933117 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.146e-44
Identity = 78/111 (70.27%), Postives = 91/111 (81.98%), Query Frame = 1
Query:   97 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 429
            M R+PCCEK    KG WT EEDQ L++Y++ +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT +E+  II LH +LGN+WS IA RLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111          
The following BLAST results are available for this feature:
BLAST of CK933117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB4_ORYSJ2.210e-5787.39Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB1_MAIZE7.127e-4877.06Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYB5_ARATH1.344e-4656.58Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYBP_MAIZE8.712e-4672.07Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB30_ANTMA2.535e-4572.07Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB4_ARATH5.647e-4571.17Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB12_ARATH7.376e-4552.38Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB3_ARATH9.633e-4568.47Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB38_MAIZE1.258e-4469.37Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB6_ARATH2.146e-4470.27Transcription repressor MYB6 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_E09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933117 ID=CK933117; Name=CK933117; organism=Citrus sinensis; type=EST; length=863bp
GGGTCACATTGTATTCGTGCTTTGAGATCAAACAATTTGATCAGAGAGAA
TTAAAAAGATACATAGCAAAGTTAAATATACTGCGGTGGTCCAAAAATGG
TGAGAGCTCCATGCTGCGAGAAGATGGGATTGAAGAAAGGTCCATGGACT
CCTGAAGAAGATCAAATTTTAATCAATTACGTTAAACTTTATGGCCATGG
CAACTGGCGGGCACTTCCCAAACAAGCAGGTTTATTAAGATGTGGAAAGA
GTTGCCGGCTCCGGTGGATAAATTACTTGCGGCCGGATATTAAACGGGGA
AATTTCACCAGAGAAGAAGAGGACACTATCATCAACCTACATGAAATGCT
CGGAAATAGATGGTCAGCAATCGCAGCAAGACTACCGGGAAGAACGGACA
ACGAAATTAAAAATGTTTGGCACACCCACTTGAAAAAGCGTCTCAAGCAA
AAGCAACAACAAGAGCCCGTGATTAATAATCATAGTAACGCTAATCATGT
TACGGCGAGATCCGAGATCTGCAGCGGCGCCAGTACTCCCGATCGGCAGA
CTCGACTACTACTTCAAGCGACATGTCGTCCGTCACCTCCTCCGCGGCTA
ATAACGCTTGCGTGAAAACAGAGCCGTCGTCGTCCGAAAACAATCACGAC
AGCTTGGTTGAAATAGATGAGAATTTTTGGACGGAAGTGTTGTCGGCTGA
GAACTCGGGCATTAGTATTGAGGACAGCAATGATCGTTTTTCAGCGGTTG
GAAGCGCCGACCCACTGTCTATAGTTGAATTTCAATCATCACTCGATGAT
TTTAGACCAGGTTCTACTTTGTGTGATAACACCGACTTTTGGTTCAATCT
TTTCACCAAAGCT
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