CK933122

Overview
NameCK933122
Unique NameCK933122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933122_ssr135 microsatellite CK933122_ssr135:135..152. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933122_ssr153 microsatellite CK933122_ssr153:153..164. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1529 contig Csv1_Contig1529:1..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933122 vs. ExPASy Swiss-Prot
Match: CBBY_RHOCA (Protein cbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.339e-13
Identity = 56/170 (32.94%), Postives = 85/170 (50.00%), Query Frame = 1
Query:  295 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNW--DPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGXXRFEGLDCFLAGDDV 798
            L+ALIFD DG + E+E +HRQA+N+ F+           Q L+W    E Y  L    GG K +M  + +  G            +    AK+ DL +  KT+RY +II SG V   PGV  L+D AKA+G ++A+ +  T+++V   +         +  +   AGD+V
Sbjct:    3 LKALIFDVDGTLAETEEVHRQAFNETFA----------AQGLDWYWSKEDYRTLLRTTGG-KERMAKHRENLG------------SGPSDAKIADLHKA-KTQRYVEIIASGQVGLLPGVAELIDRAKASGLRLAIATTTTRANVDALIAATFSKPAGDIFEVIAAGDEV 148          
BLAST of CK933122 vs. ExPASy Swiss-Prot
Match: CBBY_RHOSH (Protein cbbY OS=Rhodobacter sphaeroides GN=cbbY PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 51/168 (30.36%), Postives = 78/168 (46.43%), Query Frame = 1
Query:  295 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGXXRFEGLDCFLAGDDV 798
            ++A++FD DG + E+E LHR+A+N+ F+   V           WD E Y  L    GG +   R+   + G P+       P+ D  +AK         TER+  ++  G +  RPG+  L+ EAK AG ++AV +  +  +V        G    E  D   AGD V
Sbjct:    2 IEAILFDVDGTLAETEELHRRAFNETFAALGV--------DWFWDREEYRELLTTTGGKERIARFLRHQKGDPAPL-----PIADIHRAK---------TERFVALMAEGEIALRPGIADLIAEAKRAGIRLAVATTTSLPNVEALCRACFGHPAREIFDVIAAGDMV 147          
BLAST of CK933122 vs. ExPASy Swiss-Prot
Match: CBBYC_RALEH (Protein cbbY, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbYC PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.762e-11
Identity = 44/152 (28.95%), Postives = 74/152 (48.68%), Query Frame = 1
Query:  295 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIG 750
            +QALIFD DG + ++E  H QA+N AF+   +           WD   Y  L  ++ GGK ++  Y++        + D          + ID +   KT  Y + + +G +  RPG+ RL+DEA  AG  +A+ +  T +++   L+  +G
Sbjct:    1 MQALIFDVDGTLADTESAHLQAFNAAFAEVGL--------DWYWDAPLYTRLL-KVAGGKERLMHYWR--------MVDPEEARGCKVKETIDAVHAIKTRHYAERVGAGGLPLRPGIARLIDEAGEAGLPLAIATTTTPANLDALLQAPLG 135          
The following BLAST results are available for this feature:
BLAST of CK933122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CBBY_RHOCA1.339e-1332.94Protein cbbY OS=Rhodobacter capsulatus GN=cbbY PE=... [more]
CBBY_RHOSH3.298e-1230.36Protein cbbY OS=Rhodobacter sphaeroides GN=cbbY PE... [more]
CBBYC_RALEH4.762e-1128.95Protein cbbY, chromosomal OS=Ralstonia eutropha (s... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004347_D04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933122 ID=CK933122; Name=CK933122; organism=Citrus sinensis; type=EST; length=801bp
GGGGATTTTTAACCCGCCACATCTGACATCACTCAAACAGTCAAAAGCTA
GCAAGAAAGAAATAGAATCCACATAAAAAATTTTACAAACAAATTCATGG
CTTCTACGGTGATCCTCTCTCAAACAGCAACTCTTTCTTCTTCTTCTTCT
TCTACTACTACTACTGCCAAATTTTCTTCTTTAACTCATAGTCCTATCTT
TCACACCAATGCTCTCCGTTTTAAAAGTAACAAGAAACCACTGTCCTTGT
CTTTAACCAGAAAAGCACTTCGCGTGTCGGCTTCTTCACAGTCTCTTCAA
GCCCTCATATTTGACTGCGATGGTGTGATTATTGAATCAGAGCACTTGCA
CCGCCAAGCTTACAATGATGCTTTCTCTCACTTCAATGTCCGCTGCGACC
CTTCTTCTCAGCAGTCTCTCAATTGGGACCCCGAGTTTTATGACGTGCTC
CAGAATCAAATTGGGGGCGGCAAACCCAAAATGAGATGGTACTTTAAAGA
GCACGGGTGGCCATCTTCCACCATATTCGATAATCCCCCAGTAACCGATG
ATGACCAAGCCAAGTTGATTGATCTAATTCAGGACTGGAAAACTGAACGG
TACCAACAAATTATCAAATCTGGAACTGTGGAGCCTAGGCCAGGAGTTTT
GAGATTGATGGATGAAGCCAAGGCTGCTGGGAAAAAAGTAGCTGTTTGCT
CTGCAGCAACCAAAAGTTCAGTTATACTTTGTCTCGAAAACCTCATAGGA
NNNNNGCGGTTTGAAGGTCTCGACTGCTTCCTTGCAGGTGATGATGTAAA
G
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