CK933124

Overview
NameCK933124
Unique NameCK933124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11096 contig Csv1_Contig11096:17..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933124 vs. ExPASy Swiss-Prot
Match: TBCA_ARATH (Tubulin-specific chaperone A OS=Arabidopsis thaliana GN=At2g30410 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.551e-32
Identity = 74/113 (65.49%), Postives = 80/113 (70.80%), Query Frame = 3
Query:   72 MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKR-XXXXXXXXXXXXXXXXXXXXXXXXXXDAQSTIADVEKLFQTTEA 407
            MAT+RNLKIKTSTCKR+VKELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRMMIPDC KR                           DA+ T+ADVEK F T +A
Sbjct:    1 MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTEDA 113          
BLAST of CK933124 vs. ExPASy Swiss-Prot
Match: TBCA_HUMAN (Tubulin-specific chaperone A OS=Homo sapiens GN=TBCA PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   81 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKR 275
            VR +KIKT   KR+VKE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMMIPDC++R
Sbjct:    6 VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRR 70          
BLAST of CK933124 vs. ExPASy Swiss-Prot
Match: TBCA_BOVIN (Tubulin-specific chaperone A OS=Bos taurus GN=TBCA PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 3
Query:   81 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKR 275
            VR +KIKT   KR+VKE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMMIPDC++R
Sbjct:    6 VRQIKIKTGVVKRLVKEKMMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIPDCQRR 70          
BLAST of CK933124 vs. ExPASy Swiss-Prot
Match: TBCA_RAT (Tubulin-specific chaperone A OS=Rattus norvegicus GN=Tbca PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 3
Query:   81 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKR 275
            VR +KIKT   KR+VKE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMMIPDC++R
Sbjct:    6 VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIPDCQRR 70          
BLAST of CK933124 vs. ExPASy Swiss-Prot
Match: TBCA_CHICK (Tubulin-specific chaperone A OS=Gallus gallus GN=TBCA PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 3
Query:   81 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKR 275
            +R +KIKT   KR+ KE   YEKE +++  K   MK +  D Y +K+Q  +L ESRMMIPDC++R
Sbjct:    6 LRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQESRMMIPDCQRR 70          
The following BLAST results are available for this feature:
BLAST of CK933124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TBCA_ARATH1.551e-3265.49Tubulin-specific chaperone A OS=Arabidopsis thalia... [more]
TBCA_HUMAN1.510e-1149.23Tubulin-specific chaperone A OS=Homo sapiens GN=TB... [more]
TBCA_BOVIN4.392e-1149.23Tubulin-specific chaperone A OS=Bos taurus GN=TBCA... [more]
TBCA_RAT5.737e-1149.23Tubulin-specific chaperone A OS=Rattus norvegicus ... [more]
TBCA_CHICK5.737e-1147.69Tubulin-specific chaperone A OS=Gallus gallus GN=T... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004347_D07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933124 ID=CK933124; Name=CK933124; organism=Citrus sinensis; type=EST; length=658bp
GGGGGGGCACTGTGACCTTTGAAGTGTTGTTGATACGCAAAACTTCTNNN
TNACCGGATCAAAAGGTTAAAATGGCAACAGTTAGAAACTTGAAAATAAA
AACGAGCACATGCAAACGCGTAGTGAAGGAATTGCATTCATATGAGAAAG
AAGTTGAGAGAGAAGCTGCTAAAACTGCTGATATGAAGGAGAAAGGAGCT
GACCCTTATGACCTCAAGCAACAGGAAAATGTGCTAGCCGAGTCAAGAAT
GATGATTCCTGATTGCCGGAAGCGCCTAGAGTCTGCATTAGCTGAGCTAA
AAGCAGCTCTGACTGAGTTGGAGGAGGAAAACCAAGAAGGCCAGGAGATT
GAGGATGCTCAAAGCACTATTGCAGACGTCGAAAAGTTGTTTCAAACAAC
TGAGGCTTAGCATCCTGGCTTTTATTAATGGTTGTAATGTAAAGTGCTCG
AGAGATATGCTTATTTCTATTGCTTTATGAACCCTGTCACAATCTGAGGA
CATGAACTTGAATTATTTTCGGAGATATCATTTCTATTTGGCTCCTTGAC
ATTAACTGCTACAAGGGTTTGGAATGGCAGTCGACATTTGCTGATTATTA
GTGCATTCCCTAAGGAAATTTCATCTCCGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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