CK933128

Overview
NameCK933128
Unique NameCK933128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933128_ssr135 microsatellite CK933128_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1868 contig Csv1_Contig1868:2..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933128 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.822e-17
Identity = 47/93 (50.54%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  170 ARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 448
            ARSF+N K+ SALVADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    2 ARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of CK933128 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12
Identity = 43/95 (45.26%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  170 ARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 454
            ARS   AKL  A VADGIS +I +RGY+AA+                 L+    E +G+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:    2 ARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
BLAST of CK933128 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 2
Query:  170 ARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 454
            ARS S+ KL  A + DG+  +I +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D A+LR M L H
Sbjct:    2 ARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100          
The following BLAST results are available for this feature:
BLAST of CK933128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARG2_PHAAU3.822e-1750.54Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI2.834e-1245.26Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.399e-1139.39Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004347_C03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933128 ID=CK933128; Name=CK933128; organism=Citrus sinensis; type=EST; length=558bp
GGGGACCCATAAACACCAATACTTTGAGGGGATTTTCGCGCTACGAAGAN
NNNNNTTTCTTTAGCTGCTGCTGAAGGCTTTTCGATAGAAAGAAAAGAAG
GAAATTGCTTTCTGCAGCAGCGTTAAGATCTCTTATCATCATCATCATCC
CACATAACTAAGAAAAACGGCTCGCTCTTTCTCAAACGCTAAGCTCTTCT
CTGCTCTCGTCGCTGACGGAATCTCTAACGCCATCTACAAAAGAGGATAC
TCGGCGGCATCACAAGGCGCTGTGTCGCGGGCAACAGGGGGAGCTAGGAG
TGCTGCTGCGATGTTGAAGAAACCAGCAGAAGAGATGACAGGATCCAGTG
AGAAGGTCTCGTGGGTCCCAGACCCAGTCACTGGTGTCTACAGGCCGGAG
AATCTCGCCAACGAGCTCGATGGGGCCGACCTCAGAGCCATGTTCTTGAA
GCACAACAACTGATCATCAAAATTAATAAGTATTATTATTAATATATATT
AATTCGGACATGGAAACTGAGGAAGGACAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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