CK933129

Overview
NameCK933129
Unique NameCK933129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1414 contig Csv1_Contig1414:117..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933129 vs. ExPASy Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.421e-56
Identity = 103/112 (91.96%), Postives = 106/112 (94.64%), Query Frame = 2
Query:   74 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+QIEGVNT+EEV WY GKR+AYIYKAKTKKNGSHYRCIWGKV R HGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct:    1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of CK933129 vs. ExPASy Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.421e-56
Identity = 102/112 (91.07%), Postives = 106/112 (94.64%), Query Frame = 2
Query:   74 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+Q+EGVNT EEV+WY GKR+AYIYKAKTKKNGSHYRCIWGKV R HGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct:    1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of CK933129 vs. ExPASy Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.777e-54
Identity = 101/111 (90.99%), Postives = 105/111 (94.59%), Query Frame = 2
Query:   77 VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            +KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSLIQIEGVNT+EEV WY GKRLAYIYKAKTKKNGSHYRCIWGKV R HGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct:    1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of CK933129 vs. ExPASy Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.320e-54
Identity = 100/111 (90.09%), Postives = 105/111 (94.59%), Query Frame = 2
Query:   77 VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            +KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSL+QIEGVNT+EEV WY GKRLAYIYKAKTKKNGSHYRCIWGKV R HGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct:    1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of CK933129 vs. ExPASy Swiss-Prot
Match: RL33B_YEAST (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae GN=RPL33B PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.374e-29
Identity = 61/105 (58.10%), Postives = 77/105 (73.33%), Query Frame = 2
Query:   95 ERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            E  RLYV+G  L Y+RSK    PN SLI+IEGV T +E  +Y GKR+AY+Y+A  +  GS  R +WGKV R+HGNSGVVRA F++NLP K+ G  VR+F+YPSNI
Sbjct:    3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of CK933129 vs. ExPASy Swiss-Prot
Match: RL33A_YEAST (60S ribosomal protein L33-A OS=Saccharomyces cerevisiae GN=RPL33A PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 7.517e-29
Identity = 60/105 (57.14%), Postives = 77/105 (73.33%), Query Frame = 2
Query:   95 ERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            E  RLYV+G  L Y+RSK    PN SLI+IEGV T ++  +Y GKR+AY+Y+A  +  GS  R +WGKV R+HGNSGVVRA F++NLP K+ G  VR+F+YPSNI
Sbjct:    3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of CK933129 vs. ExPASy Swiss-Prot
Match: RL33A_SCHPO (60S ribosomal protein L33-A OS=Schizosaccharomyces pombe GN=rpl33a PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.492e-26
Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RLYV+   L ++RSK   +P TSL++IEG ++KEE  +Y GKR+ ++YK+     GS  R IWG V+R HGNSGVVRA+F  NLPPK+ G  +RV +YPSN+
Sbjct:    7 RLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108          
BLAST of CK933129 vs. ExPASy Swiss-Prot
Match: RL35A_DICDI (60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.779e-26
Identity = 52/103 (50.49%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYK-AKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            ++Y +G +LGY+RS++ QYPN SLI+IEGV ++E+  +Y GK++  + K +K+ KN + ++  WGK+ ++HG+SGVV+A+F  NLPPK+MG  VRV +YPSNI
Sbjct:    3 KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSKSAKNPTGHKISWGKICKTHGSSGVVQARFARNLPPKAMGAPVRVMLYPSNI 105          
BLAST of CK933129 vs. ExPASy Swiss-Prot
Match: RL35A_XENLA (60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.733e-25
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RL+ + T  GYKR   NQ  +T+L++IEGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGKPNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CK933129 vs. ExPASy Swiss-Prot
Match: RL33B_SCHPO (60S ribosomal protein L33-B OS=Schizosaccharomyces pombe GN=rpl33b PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.263e-25
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RLYV+   L ++RSK   +P TS+++IEG ++KEE  +Y GKR+ Y+YK+     GS  R IWG +AR HGNSG VRA+F  NLP K+ G  +RV +YPSNI
Sbjct:    7 RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108          
The following BLAST results are available for this feature:
BLAST of CK933129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
R35A3_ARATH9.421e-5691.9660S ribosomal protein L35a-3 OS=Arabidopsis thalia... [more]
R35A1_ARATH9.421e-5691.0760S ribosomal protein L35a-1 OS=Arabidopsis thalia... [more]
R35A2_ARATH1.777e-5490.9960S ribosomal protein L35a-2 OS=Arabidopsis thalia... [more]
R35A4_ARATH2.320e-5490.0960S ribosomal protein L35a-4 OS=Arabidopsis thalia... [more]
RL33B_YEAST3.374e-2958.1060S ribosomal protein L33-B OS=Saccharomyces cerev... [more]
RL33A_YEAST7.517e-2957.1460S ribosomal protein L33-A OS=Saccharomyces cerev... [more]
RL33A_SCHPO3.492e-2652.9460S ribosomal protein L33-A OS=Schizosaccharomyces... [more]
RL35A_DICDI7.779e-2650.4960S ribosomal protein L35a OS=Dictyostelium discoi... [more]
RL35A_XENLA1.733e-2552.3460S ribosomal protein L35a OS=Xenopus laevis GN=rp... [more]
RL33B_SCHPO2.263e-2551.9660S ribosomal protein L33-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_C05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933129 ID=CK933129; Name=CK933129; organism=Citrus sinensis; type=EST; length=638bp
GGGGGCTCCAACTAGGGTTTCTTCTTTGCAGACTCAGGCGGCAAGCAGGT
GGGCAGAGCTTCAATCATAAACAATGGTGAAGGGCAGGCAAGGCGAGCGC
GTCAGACTCTATGTTCGAGGAACAATTCTGGGATACAAAAGGTCAAAATC
AAACCAGTATCCAAACACATCACTGATTCAGATCGAGGGAGTGAACACAA
AGGAAGAGGTGGCGTGGTACTGCGGCAAGCGTTTGGCTTACATTTACAAG
GCCAAGACTAAGAAGAACGGGAGCCACTATCGTTGCATTTGGGGAAAAGT
TGCCAGATCTCACGGTAACAGCGGCGTCGTTCGTGCCAAGTTCAAGTCCA
ATCTCCCTCCCAAATCCATGGGAGATAGAGTTAGGGTTTTCATGTATCCC
AGCAACATATGAGCAGCATGGTTCGAGAAGCTACTAGATCGACAAGTAAG
ATGTACCTTCTGAATTTGGGATTTATTCACTTAGCATTTATGTTGCAAGA
TTTTGGAGTCGGGAGTTATACTGGCAAGCTGTTTTGGCTTTTGCTACTGT
TCAGTTAGTGTGGATTTTGGAACATTGATTTTAATGTTAATGCTTAGTTT
TTTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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