CK933131

Overview
NameCK933131
Unique NameCK933131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1533 contig Csv1_Contig1533:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933131 vs. ExPASy Swiss-Prot
Match: GLU2B_BOVIN (Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.857e-28
Identity = 70/209 (33.49%), Postives = 102/209 (48.80%), Query Frame = 3
Query:   60 PYREEDHDYTSTSYKTDVDDDLDMSEMTTPSS---PSWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEE--GHSTTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSE 659
            P  EED D      + D D++ + S+   P     P+   +               QT    + A   R +++E+   L  ++  I +L Q++  +FGP  EF   Y  C+E   N+YVY++CP+K  +Q+   G S T LG+W  +     D +  M +  G  CW GP+RS  VRL CG +  VT   EPSRCEY+  L TPA C E
Sbjct:  311 PTEEEDEDEEDEETEEDEDEEDEDSQGEQPKDAPPPAPAPQTASPTEEDRMPPYDEQTQAFINAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWAGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETVVTSTTEPSRCEYLMELMTPAACPE 519          
BLAST of CK933131 vs. ExPASy Swiss-Prot
Match: GLU2B_MOUSE (Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.226e-27
Identity = 59/145 (40.69%), Postives = 82/145 (56.55%), Query Frame = 3
Query:  243 AARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGH--STTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSE 659
            A   R +++E    L +++  I SL Q++  +FGP  EF   Y  C+E   N+YVY++CP+K  +Q+  H  S T LG+W  +     D +  M +  G  CW GP+RS  VRL CG +  VT   EPSRCEY+  L TPA C E
Sbjct:  363 AQEARSKFEEVERSLKEMEESIRSLEQEISFDFGPSGEFAYLYSQCYELTTNEYVYRLCPFKLVSQKPKHGGSPTSLGTWGSWAGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETVVTSTTEPSRCEYLMELMTPAACPE 507          
BLAST of CK933131 vs. ExPASy Swiss-Prot
Match: GLU2B_HUMAN (Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.959e-27
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  219 QTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEE--GHSTTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSE 659
            QT      A   R +++E+   L  ++  I +L Q++  +FGP  EF   Y  C+E   N+YVY++CP+K  +Q+   G S T LG+W  +     D +  M +  G  CW GP+RS  VRL CG +  VT   EPSRCEY+  L TPA C E
Sbjct:  362 QTQAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETMVTSTTEPSRCEYLMELMTPAACPE 514          
BLAST of CK933131 vs. ExPASy Swiss-Prot
Match: GLU2B_SCHPO (Glucosidase 2 subunit beta OS=Schizosaccharomyces pombe GN=gtb1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12
Identity = 42/155 (27.10%), Postives = 82/155 (52.90%), Query Frame = 3
Query:  222 TPVDKSDAAR----VRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQE 674
            TP+  S++ R     +++ D + +    ++   + L  +L++  G +  + +  G   + +   Y YKV  Y+   Q+    +  LG++   E +  ++ + NG  CWNGP RS  V + CG++NE+  V E  +CEY+  + +PA CS ++L++
Sbjct:  332 TPLTDSESYRRFEAAQRDLDAAEENEKSLEKEHTKLMHELEYHHGWDL-YRAIKGMETKREIGGYTYKVVFYENVFQD----SILLGNFASQEGN--VLKYENGQSCWNGPHRSAIVTVECGVENEIVSVLEAQKCEYLIKMKSPAACSPDQLKQ 479          
The following BLAST results are available for this feature:
BLAST of CK933131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GLU2B_BOVIN5.857e-2833.49Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH... [more]
GLU2B_MOUSE2.226e-2740.69Glucosidase 2 subunit beta OS=Mus musculus GN=Prkc... [more]
GLU2B_HUMAN4.959e-2739.22Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKC... [more]
GLU2B_SCHPO1.549e-1227.10Glucosidase 2 subunit beta OS=Schizosaccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004347_C08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933131 ID=CK933131; Name=CK933131; organism=Citrus sinensis; type=EST; length=825bp
GGGAAAGGTATGACACTGTAAAGTATGATGACANNNATGTGGAAGATGAT
ATAGATGAACCTTATAGAGAGGAGGATCATGATTATACCAGTACTTCATA
CAAAACAGATGTAGATGACGACTTGGATATGTCAGAGATGACAACTCCAA
GTAGTCCATCTTGGTTGGAGAAGATACAACAAACAGTACGGAATATTTTG
CAGGCTGTTAATTTGTTCCAAACGCCAGTAGACAAATCAGACGCTGCTCG
TGTCCGCAAGGAGTATGATGAGTCTAGCGACAAGTTGTCTAAAATACAGT
CGAGGATATCGAGTTTGACACAAAAGCTTAAGCATGAATTTGGGCCAGAG
AAGGAGTTCTACTCATTCTACGGTCATTGTTTTGAGAGCAAGCAGAACAA
GTATGTTTACAAAGTCTGTCCGTACAAAAAAGCTACCCAAGAGGAGGGCC
ACTCAACGACTCGTCTGGGGAGCTGGGACAAATTCGAGGACTCATACCAC
ATCATGCTATTTTCAAATGGTGATAAGTGTTGGAATGGGCCTGATAGAAG
TATGAAGGTCCGGCTAAGATGTGGGTTGAAAAATGAGGTTACTGATGTTG
ATGAACCAAGCCGCTGCGAATATGTCGCATTATTGTATACCCCTGCTGTT
TGCTCAGAGGAAAAGCTTCAGGAACTGCAACATAAACTAGATGAATTGAA
CAAGAAGCAACCTCAGCACCACGATGAACTTTAAATTGTCTTGATAGATT
ACCCAAAATGCTCCAGAGNNNGCTGACTGCTTGAGCGAATCTCGGTGTGA
AAGATTATAAATCAGTCAACAAATC
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