CK933132

Overview
NameCK933132
Unique NameCK933132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1534 contig Csv1_Contig1534:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.440e-46
Identity = 96/140 (68.57%), Postives = 107/140 (76.43%), Query Frame = 3 
Query:   75 MSSEAAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 494
            MSS  A  KGGRG++K TK VSRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P                  GNAARDNKKNRI+PR IQLAV+NDEE SKLLG+VTIANGGVLPNIHQ LLPKK+   KGEIGS SQEF
Sbjct:    1 MSSSGA--KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.440e-46
Identity = 94/138 (68.12%), Postives = 103/138 (74.64%), Query Frame = 3 
Query:   81 SEAAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 494
            S  A TKGGRG+ K +K VSRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P                  GNAARDNK NRI+PR IQLAV+NDEE SKLLGSVTIANGGVLPNIHQ LLPKK    KGEIGS SQEF
Sbjct:    2 SSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.606e-45
Identity = 95/142 (66.90%), Postives = 105/142 (73.94%), Query Frame = 3 
Query:   75 MSSEAAA--TKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 494
            MSS A +  TKGGRG+ K TK VSRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P                  GNAARDNKK RI+PR IQLAV+NDEE SKLLGSVTIANGGVLPNIHQ LLP K    KG+IGS SQEF
Sbjct:    1 MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.015e-45
Identity = 91/136 (66.91%), Postives = 101/136 (74.26%), Query Frame = 3 
Query:   87 AAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 494
            +  TKGGRG+ K TK VSRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P                  GNAARDNKK RI+PR IQLAV+NDEE SKLLGSVTIANGGVLPNIHQ LLP K    KG+IGS SQEF
Sbjct:    7 SGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.794e-42
Identity = 87/136 (63.97%), Postives = 101/136 (74.26%), Query Frame = 3 
Query:   87 AAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 494
            +A   GGRG+SK +K VSRS KAGLQFPVGR+AR+LK G+YA+RVG+G+P                  GNAARDNKKNRI+PR IQLAV+NDEE S+LLG+VTIA GGVLPNIHQ LLPKK    K +IGS SQEF
Sbjct:    3 SAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.794e-42
Identity = 87/136 (63.97%), Postives = 101/136 (74.26%), Query Frame = 3 
Query:   87 AAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 494
            +A   GGRG+SK +K VSRS KAGLQFPVGR+AR+LK G+YA+RVG+G+P                  GNAARDNKKNRI+PR IQLAV+NDEE S+LLG+VTIA GGVLPNIHQ LLPKK    K +IGS SQEF
Sbjct:    3 SAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.174e-40
Identity = 86/131 (65.65%), Postives = 99/131 (75.57%), Query Frame = 3 
Query:  102 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 494
            GGRG++K TK VSRS KAGLQFPVGR+AR+LK G+YA+RVG+G+P                  GNAARDNKKNRI+PR IQLAV+NDEE S+LLG+VTIA GGVLPNI Q LLPKK    KG+IGS SQEF
Sbjct:    8 GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGG-KGDIGSASQEF 137
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.174e-40
Identity = 86/131 (65.65%), Postives = 99/131 (75.57%), Query Frame = 3 
Query:  102 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 494
            GGRG++K TK VSRS KAGLQFPVGR+AR+LK G+YA+RVG+G+P                  GNAARDNKKNRI+PR IQLAV+NDEE S+LLG+VTIA GGVLPNI Q LLPKK    KG+IGS SQEF
Sbjct:    8 GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGG-KGDIGSASQEF 137
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.343e-36
Identity = 75/122 (61.48%), Postives = 90/122 (73.77%), Query Frame = 3 
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGE 470
            G+G++   K VSRS KAGLQFPVGR+AR+LKKG+YA+R+G+G+P                  GNAARDNKKNRI+PR IQLA++NDEE  KLLG VTIA+GGVLPNIH  LLPKK+   KGE
Sbjct:    5 GKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.754e-36
Identity = 75/122 (61.48%), Postives = 89/122 (72.95%), Query Frame = 3 
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGE 470
            G+G++   K VSRS KAGLQFPVGR+AR+LKKG+YA+R+G+G+P                  GNAARDNKKNRI+PR IQLA++NDEE  KLLG VTIA+GGVLPNIH  LLPKK    KGE
Sbjct:    5 GKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGE 126
The following BLAST results are available for this feature:
BLAST of CK933132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2AX_PICAB5.440e-4668.57Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AX_CICAR5.440e-4668.12Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ARATH4.606e-4566.90Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH6.015e-4566.91Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2AXB_ORYSJ2.794e-4263.97Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI2.794e-4263.97Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AXA_ORYSJ1.174e-4065.65Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI1.174e-4065.65Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A4_VOLCA1.343e-3661.48Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A_CHLRE1.754e-3661.48Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_C09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933132 ID=CK933132; Name=CK933132; organism=Citrus sinensis; type=EST; length=655bp
GCGGGGATCGCAAACCGCTTTGAATTTATNNNAAACTCCCAATCTTCCTC
NNAAGAAAAACCCATTTCTCAACCATGAGTTCAGAAGCTGCAGCAACCAA
GGGTGGGCGGGGCAGGTCCAAGGACACGAAACCGGTGTCCAGATCCCACA
AGGCCGGTCTCCAGTTCCCGGTTGGCCGTGTCGCTCGCTTCCTCAAGAAA
GGCCGATACGCCCAGCGCGTCGGATCCGGCTCTCCCGTCTATCTTTCCGC
CGTCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCTGGGAACGCGG
CGAGGGACAACAAGAAGAACAGAATCATTCCAAGGCGCATTCAGTTGGCT
GTGAAAAACGACGAGGAGTTTAGCAAACTGCTTGGCTCTGTGACTATCGC
TAATGGTGGTGTGTTGCCTAACATTCATCAGAACTTGCTGCCGAAGAAAG
CTGCAGCACGGAAGGGCGAAATTGGATCCGTGTCTCAGGAGTTTTAGGGG
TTTAATTAGGGATCTGGAATCTTCGATTTCGGGTTATGTTTATAAGTATG
TAGTGAATTTGGGTTTTCACTTTCATATGTGTAAATCTCATTTTGGATAA
TTGAGTAAAAATCCTGGGTTTCTTCGCAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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