CK933134

Overview
NameCK933134
Unique NameCK933134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9325 contig Csv1_Contig9325:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK933134 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.252e-16
Identity = 38/61 (62.30%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  394 DCIPLCAARCKAHSRPNV-GRACTTCCVRCKCVPPGTYGNREKCGKCYTDMTTRGNKPKCP 573
            DC   CAARC+  SRP +  RAC TCC RC CVPPGT GN E C  CY  +TT GNK KCP
Sbjct:   45 DCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETC-PCYASLTTHGNKRKCP 104
[Close]
BLAST of CK933134 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.053e-15
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  394 DCIPLCAARCKAHSRPNV-GRACTTCCVRCKCVPPGTYGNREKCGKCYTDMTTRGNKPKCP 573
            DC   C ARC+   RP +  RAC TCC RC CVPPGTYGN +KC +CY  +TT G + KCP
Sbjct:   39 DCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKCP 98
[Close]
BLAST of CK933134 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.904e-13
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:  394 DCIPLCAARCKAHSRPNVG-RACTTCCVRCKCVPPGTYGNREKCGKCYTDMTTRGNKPKCP 573
            DC   C  RC   SRPN+  RAC +CC RC CVPPGT GN   C  CY  +TTRG + KCP
Sbjct:   40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKCP 99
The following BLAST results are available for this feature:
BLAST of CK933134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SNAK2_SOLTU6.252e-1662.30Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH4.053e-1557.38Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH2.904e-1355.74Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004347_C11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933134 ID=CK933134; Name=CK933134; organism=Citrus sinensis; type=EST; length=789bp
GGGGGGCACCAACCACGGACTAGCTAGCTTCTCAAACTTTCTTCTTGGTT
CCTTTCGGCTGGGTTCTGTCTTCCAATGGCTTTCAGAGCTGCTCCGCTTC
TGTTGGCCACTTTGCTTTTAGTCTCTACAAGTGTTTTATCCAACAATGAG
GAGGAATATCTGCTAGAAAAGGATACTACTTACCCCAAAACCCCAGTACC
TGCACCAGCTCCTACTAAGGCTCCAGTTAAGCCAATCACTCCACCACCAG
TAGTGAGGCCACCCACCACTTATCCACCACCAGTGAAGCCACCCACAACC
ACTCCCCCACCAGTGACCCCACCTAAAACAGCTCCTGCCCCCCAAGTTCC
CTCTCCGGCATCTCCACCAATGCCTATTGTGAGGTCAAACAAAGATTGCA
TCCCACTATGTGCAGCAAGATGCAAGGCACACTCAAGGCCAAACGTTGGA
AGAGCTTGCACTACATGCTGTGTTAGGTGCAAATGTGTTCCACCAGGAAC
TTATGGCAACAGAGAGAAGTGTGGCAAGTGCTACACTGATATGACTACTC
GGGGCAATAAACCCAAGTGCCCTTAAGTTATAAATATTAGCATCTGTTGA
AATTTTATGTTAGCTTAAGTTGACCTGCAATAAGTGTTAAAGAGTAAATG
GTTTTCTGTGACTTTCTGTGTCACTGCAAGATTGTGCATGTAGTGTGTTA
AGCCATGGCTGATCTACTTCTGTTAGTTTCTGCTGAAATTTCCCTTGTTA
ATCCTAGACATTATAAAGTAACAAAAAAAAAAAAAAAAA
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