CK933137

Overview
NameCK933137
Unique NameCK933137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A_ORYSJ (60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.522e-27
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQXXXXXXXXXXXXXXXQRLT 248
            +GK+RLGSIVHKKTASVLCLTTVKNEDK+EFSKILEAIKANFNDK++E+RKKWGGG+MGSKSQ               QR+T
Sbjct:  177 KGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQRMT 258          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A1_ARATH (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.553e-27
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 191
            +GKSRLG++VH+KTAS LCLTTVKNEDK+EFSKILEAIKANFNDKYEE RKKWGGGIMGSKSQ
Sbjct:  176 KGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQ 238          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A2_ARATH (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana GN=RPL7AB PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.288e-26
Identity = 55/63 (87.30%), Postives = 61/63 (96.83%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 191
            +GKSRLG++VH+KTA+ LCLTTVKNEDK+EFSKILEAIKANFNDKYEE RKKWGGGIMGSKSQ
Sbjct:  175 KGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQ 237          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A_DROME (60S ribosomal protein L7a OS=Drosophila melanogaster GN=RpL7A PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.181e-17
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 188
            +GK+RLG +V +KT + L LTTV N DK  F K+LEA+K NFN+++EE+R+ WGGGI+GSKS
Sbjct:  190 KGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKS 251          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL8_SCHPO (60S ribosomal protein L8 OS=Schizosaccharomyces pombe GN=rpl8 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 7.834e-16
Identity = 35/63 (55.56%), Postives = 51/63 (80.95%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 191
            + K+RLG+++H+KTA+VL +T V+ EDK E + I+ A+ ANF+ KY+E R+KWGGGIMG K+Q
Sbjct:  181 KNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQ 243          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A_ICTPU (60S ribosomal protein L7a OS=Ictalurus punctatus GN=rpl7a PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.888e-15
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 188
            +GK+RLG +VH+KT + +C T    ED+   +K++EAIK N+ND+YEE+R+ WGG IMG KS
Sbjct:  185 KGKARLGRLVHRKTCTSVCFTQTNPEDRAALAKLVEAIKTNYNDRYEEIRRHWGGNIMGPKS 246          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A_TAKRU (60S ribosomal protein L7a OS=Takifugu rubripes GN=rpl7a PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.477e-14
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 188
            +GK+RLG +VH+KT + +  T    EDK   +K++EAIK N+ND+YEE+R+ WGGGI+G KS
Sbjct:  185 KGKARLGRLVHRKTCTSVAFTQTNPEDKGALAKLVEAIKTNYNDRYEEIRRHWGGGILGPKS 246          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A_BOVIN (60S ribosomal protein L7a OS=Bos taurus GN=RPL7A PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.520e-14
Identity = 30/62 (48.39%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 188
            +GK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  185 KGKARLGRLVHRKTCTTVAFTQVNSEDKSALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A_ANOGA (60S ribosomal protein L7a OS=Anopheles gambiae GN=RpL7A PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.291e-14
Identity = 30/62 (48.39%), Postives = 50/62 (80.65%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 188
            +GK+RLG++V++KT + + LT V+N DK   +K++E IK NFND+++++R+ WGGG++G KS
Sbjct:  191 KGKARLGTLVYRKTCTCVALTQVENADKPNLAKLVETIKTNFNDRFDDIRRHWGGGLLGPKS 252          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A_RAT (60S ribosomal protein L7a OS=Rattus norvegicus GN=Rpl7a PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 30/62 (48.39%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 188
            +GK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  185 KGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
The following BLAST results are available for this feature:
BLAST of CK933137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL7A_ORYSJ1.522e-2771.9560S ribosomal protein L7a OS=Oryza sativa subsp. j... [more]
RL7A1_ARATH7.553e-2788.8960S ribosomal protein L7a-1 OS=Arabidopsis thalian... [more]
RL7A2_ARATH1.288e-2687.3060S ribosomal protein L7a-2 OS=Arabidopsis thalian... [more]
RL7A_DROME3.181e-1759.6860S ribosomal protein L7a OS=Drosophila melanogast... [more]
RL8_SCHPO7.834e-1655.5660S ribosomal protein L8 OS=Schizosaccharomyces po... [more]
RL7A_ICTPU3.888e-1553.2360S ribosomal protein L7a OS=Ictalurus punctatus G... [more]
RL7A_TAKRU1.477e-1453.2360S ribosomal protein L7a OS=Takifugu rubripes GN=... [more]
RL7A_BOVIN2.520e-1448.3960S ribosomal protein L7a OS=Bos taurus GN=RPL7A P... [more]
RL7A_ANOGA3.291e-1448.3960S ribosomal protein L7a OS=Anopheles gambiae GN=... [more]
RL7A_RAT4.299e-1448.3960S ribosomal protein L7a OS=Rattus norvegicus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004347_B05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933137 ID=CK933137; Name=CK933137; organism=Citrus sinensis; type=EST; length=404bp
GGGAAGGAAAATCACGTTTGGGATCGATTGTCCACAAGAAGACGGCTTCT
GTATTGTGTTTGACAACAGTTAAGAATGAGGATAAGATGGAATTCAGCAA
GATCCTTGAGGCCATCAAGGCTAACTTCAACGACAAGTACGAGGAGTTAA
GAAAGAAGTGGGGAGGTGGTATTATGGGCTCCAAATCACAGGCAAAAACC
AAGGCCAAGGAGAAACTTCTTGCTAAGGAAGCTGCTCAGAGGCTGACCAA
GGATTTTGCTCAGTCTTAAGAGAGTCCAATGTTTTGTTATTTCTTGTGCT
TTCATCATCCTTTTATTTTAATGAACATGTTTCTATGTAGTCTCTTAGCA
TTTTACCTTATTAAGATTTTTAATTGAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
back to top